Job Description P76217 Confidence 100.00% Date Thu Jan 5 12:20:42 GMT 2012 Rank 15 Aligned Residues 473 % Identity 26% Template c1t90B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:probable methylmalonate-semialdehyde PDBTitle: crystal structure of methylmalonate semialdehyde2 dehydrogenase from bacillus subtilis Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.
Query SS confidence														.
Query Sequence		M	T	L	W	I	N	G	D	W	I	T	G	.	Q	G	A	S	R	V	K	R	N	P	V	S	G	E	V	L	W	Q	G	N	D	A	D	A	A	Q	V	E	Q	A	C	R	A	A	R	A	A	F	P	R	W	A	R	L	S	F	A	E	R	H	A	V	V	E	R	F	A	A	L	L	E	S	N	K	A	E	L
Query Conservation														.
Alig confidence														.
Template Conservation
Template Sequence		L	K	N	Y	I	N	G	E	W	V	E	S	K	T	D	Q	Y	E	D	V	V	N	P	A	T	K	E	V	L	C	Q	V	P	I	S	T	K	E	D	I	D	Y	A	A	Q	T	A	A	E	A	F	K	T	W	S	K	V	A	V	P	R	R	A	R	I	L	F	N	F	Q	Q	L	L	S	Q	H	K	E	E	L
Template Known Secondary structure							T	T						S		S								T	T	T	T																													T	T	S																			T
Template Predicted Secondary structure
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.		.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		T	A	I	I	A	R	E	T	G	K	P	R	W	E	A	A	T	E	V	T	A	M	I	N	K	I	A	I	S	I	K	A	Y	H	V	R	T	G	E	.	Q	R	S	E	M	P	D	G	A	A	S	L	R	H	R	P	H	G	V	L	A	V	F	G	P	Y	N	F	P	G	H	L	P	N	G	H	I	V	P	A
Query Conservation																																									.
Alig confidence																																									.
Template Conservation
Template Sequence		A	H	L	I	T	I	E	N	G	K	N	T	K	E	A	L	G	E	V	G	R	G	I	E	N	V	E	F	A	A	G	A	P	S	L	M	M	G	D	S	L	A	S	I	A	T	D	V	E	A	A	N	Y	R	Y	P	I	G	V	V	G	G	I	A	P	F	N	F	P	M	M	V	P	C	W	M	F	P	M	A
Template Known Secondary structure																															T	T															T	T											S								S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	G	N	T	I	I	F	K	P	S	E	L	T	P	W	S	G	E	A	V	M	R	L	W	Q	Q	A	G	L	P	P	G	V	L	N	L	V	Q	G	G	R	E	T	G	Q	A	L	S	A	L	E	D	L	D	G	L	L	F	T	G	S	A	N	T	G	Y	Q	L	H	R	Q	L	S	G	Q	P	E	K
Query Conservation
Alig confidence																																																																															.
Template Conservation																																																																															.
Template Sequence		I	A	L	G	N	T	F	I	L	K	P	S	E	R	T	P	L	L	T	E	K	L	V	E	L	F	E	K	A	G	L	P	K	G	V	F	N	V	V	Y	G	A	H	D	V	V	N	G	I	L	E	H	P	E	I	K	A	I	S	F	V	G	S	K	P	V	G	E	Y	V	Y	K	K	G	S	E	N	.	L	K
Template Known Secondary structure				T	T									T	T	S														T	T			T	T	S							S											T	T								S															T	.	T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.		.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	A	L	E	M	G	G	N	N	P	L	I	I	D	E	V	A	D	I	D	A	A	V	H	L	T	I	Q	S	A	F	V	T	A	G	Q	R	C	T	C	A	R	R	L	L	L	K	S	G	A	Q	G	D	A	F	L	A	R	L	V	A	V	S	Q	R	L	T	P	G	N	W	D	D	E	P	Q	P	F	I
Query Conservation
Alig confidence																																																						.																						.
Template Conservation																																																						.																						.
Template Sequence		R	V	Q	S	L	T	G	A	K	N	H	T	I	V	L	N	D	A	N	L	E	D	T	V	T	N	I	V	G	A	A	F	G	S	A	G	E	R	C	M	A	C	A	V	V	T	V	E	E	G	I	A	.	D	E	F	M	A	K	L	Q	E	K	V	A	D	I	K	I	G	N	G	L	D	.	D	G	V	F	L
Template Known Secondary structure																	T	T																G	G	G	G			T	T									T	T	T		.													T			B	S		T	T	S	.	T	T			B
Template Predicted Secondary structure																																																						.																						.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.		.	320	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.		.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																																					.											.
Query SS confidence																																					.											.
Query Sequence		G	G	L	I	S	E	Q	A	A	Q	Q	V	V	T	A	W	Q	Q	L	E	A	M	G	G	R	P	L	L	A	P	R	L	L	Q	A	.	G	T	S	L	L	T	P	G	I	I	.	E	M	T	G	V	A	G	V	P	D	E	E	V	F	G	P	L	L	R	V	W	R	Y	D	T	F	D	E	A	I	R	M	A
Query Conservation																																					.											.
Alig confidence																																					.											.
Template Conservation
Template Sequence		G	P	V	I	R	E	D	N	K	K	R	T	L	S	Y	I	E	K	G	L	E	E	G	A	R	L	V	C	D	G	R	E	N	V	S	D	D	G	Y	F	V	G	P	T	I	F	D	N	V	T	T	E	M	T	I	W	K	D	E	I	F	A	P	V	L	S	V	I	R	V	K	N	L	K	E	A	I	E	I	A
Template Known Secondary structure					S	S																		T							T	T	S	S			S	S	S	S									S			T	T	S					S				S	S								S	S
Template Predicted Secondary structure
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.			.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure																																																									.	.
Query SS confidence																																																									.	.
Query Sequence		N	N	T	R	F	G	L	S	C	G	L	V	S	P	E	R	E	K	F	D	Q	L	L	L	E	A	R	A	G	I	V	N	W	N	K	P	L	T	G	A	A	S	T	A	P	F	G	G	I	G	A	S	G	N	H	.	.	R	P	S	A	W	Y	A	A	D	Y	C	A	W	P	M	A	S	L	E	S	D	S	L
Query Conservation																																																									.	.
Alig confidence																																																									.	.																					.	.
Template Conservation																																																																															.	.
Template Sequence		N	K	S	E	F	A	N	G	A	C	L	F	T	S	N	S	N	A	I	R	Y	F	R	E	N	I	D	A	G	M	L	G	I	N	L	G	V	P	A	P	M	A	F	F	P	F	S	G	W	K	S	S	F	F	G	T	L	H	A	N	G	K	D	S	V	D	F	Y	T	R	K	K	V	V	T	A	R	.	.	Y
Template Known Secondary structure				S	S			S																						S					S		S						T	T	S		B					T	T			S	S	S		B	S								T										.	.
Template Predicted Secondary structure																																																																															.	.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480			.
		475	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	A	P	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.