Job Description P75901 Confidence 2.08% Date Thu Jan 5 12:15:51 GMT 2012 Rank 49 Aligned Residues 109 % Identity 12% Template c2jagA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:halorhodopsin; PDBTitle: l1-intermediate of halorhodopsin t203v Resolution 1.93 Å

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		I	V	S	L	I	A	S	Y	L	K	R	T	Q	R	G	M	X	D	.	C	V	M	W	I	G	V	L	L	A	A	A	L	C	L	G	L	G	I	F	I	N	E	T	T	G	E	F	P	Q	K	E	Q	E	L	F	E	G	I	V	A	V	I	A	V	V	I	L	T	W	M	V	F	W	M	R	K	V	S	R	N
Query Conservation																				.
Alig confidence																				.
Template Conservation
Template Sequence		I	G	M	C	V	T	G	L	A	A	A	M	T	T	S	A	L	L	F	R	W	A	F	Y	A	I	S	C	A	F	F	V	V	V	L	S	A	L	V	T	D	W	A	A	S	A	S	S	A	G	T	A	E	I	F	D	T	L	R	V	L	V	V	V	L	W	L	G	Y	P	I	V	W	A	V	G	V	E	G	L
Template Known Secondary structure																S																									T									T	T																										S	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
					97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	V	K	V	Q	L	E	Q	A	V	D	S	A	L	Q	R	G	N	H	H	G	W	A	L	V	M	M	V	F	F	A
Query Conservation		.	.	.
Alig confidence		.	.	.
Template Conservation
Template Sequence		A	L	V	Q	S	V	G	A	T	S	W	A	Y	S	V	L	D	V	F	A	K	Y	V	F	A	F	I	L	L	R	W	V	A
Template Known Secondary structure			S	S																		T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions