Job Description P16692 Confidence 99.94% Date Thu Jan 5 11:35:43 GMT 2012 Rank 16 Aligned Residues 220 % Identity 19% Template c3zq4C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 Resolution 3.00 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.																.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	L	T	L	T	G	T	G	G	A	Q	G	V	P	A	W	G	C	E	C	A	A	C	A	R	A	R	R	S	P	Q	Y	R	R	Q	P	C	S	G	V	V	K	F	N	D	A	I	T	L	I	D	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	H	D	L	A	D	R	W	S	P	G
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	A	V	F	A	L	G	G	L	G	E	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	N	T	Y	A	V	Q	F	Q	D	E	I	V	L	I	D	A	G	I	K	F	P	E	D	E	L	L	G	I	D	Y	V	I	P	D	Y	T	Y	L	V	K	N	E	D
Template Known Secondary structure									S	B	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	T										B				T	T	S	T	T		S											T	T	G	G
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.																								.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																															.	.	.																																.
Query SS confidence																																															.	.	.																																.
Query Sequence		S	F	Q	Q	F	L	L	T	H	Y	H	M	D	H	V	Q	G	L	F	P	L	R	W	G	V	G	D	P	I	P	V	Y	G	P	P	D	E	Q	G	C	D	D	L	F	K	.	.	.	H	P	G	L	L	D	F	S	H	T	V	E	P	F	V	V	F	D	L	Q	G	L	Q	V	T	P	L	P	L	N	H	.
Query Conservation																																															.	.	.																																.
Alig confidence																											.	.																			.	.	.																																.
Template Conservation																											.	.
Template Sequence		K	I	K	G	L	F	I	T	H	G	H	E	D	H	I	G	G	I	P	Y	L	L	R	Q	V	.	.	N	I	P	V	Y	G	G	K	L	A	I	G	L	L	R	N	K	L	E	E	H	G	L	L	R	Q	T	K	L	N	I	I	G	E	D	D	I	V	K	F	R	K	T	A	V	S	F	F	R	T	T	H	S
Template Known Secondary structure		G							S								T	T						T	T		.	.																						S	T	T	T	T	S							T	T						T	T									B		S
Template Predicted Secondary structure																											.	.
Template SS confidence
		66	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.									.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.
Query Sequence		S	K	L	T	F	G	Y	L	L	E	T	A	H	S	R	V	A	W	L	S	D	.	.	.	.	.	.	.	.	T	A	G	L	P	E	K	T	L	K	F	L	R	N	N	Q	P	Q	V	M	V	M	D	C	S	H	P	P	R	A	D	A	P	R	N	H	C	D	L	N	T	V	L	A	L	N	Q	V	I	R	S
Query Conservation																							.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	P	D	S	Y	G	I	V	V	K	T	P	P	G	N	I	V	H	T	G	D	F	K	F	D	F	T	P	V	G	E	P	A	N	L	T	K	M	A	E	I	G	K	E	G	V	L	C	L	L	S	D	S	T	N	S	E	N	P	E	F	T	M	S	E	R	R	V	G	E	S	I	H	D	I	F	R	K	V	D
Template Known Secondary structure		S	S	S									T	T								S		B			S	S		S	S	S													T										T	T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		P	R	V	I	L	T	H	I	S	H	Q	F	D	.	.	A	W	L	M	E	N	A	L	P	S	G	F	E	V	G	F	D	G	M
Query Conservation															.	.
Alig confidence															.	.
Template Conservation
Template Sequence		G	R	I	I	F	A	T	F	A	S	N	I	H	R	L	Q	Q	V	I	E	A	A	V	Q	N	G	R	K	V	A	V	F	G	R
Template Known Secondary structure		S								T	T														T	T	T							S
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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