Job Description P16692 Confidence 99.95% Date Thu Jan 5 11:35:43 GMT 2012 Rank 10 Aligned Residues 213 % Identity 17% Template c3rpcD_ PDB info PDB header:hydrolase Chain: D: PDB Molecule:possible metal-dependent hydrolase; PDBTitle: the crystal structure of a possible metal-dependent hydrolase from2 veillonella parvula dsm 2008 Resolution 1.49 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.												.	.	.	.	60	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Query Sequence		S	L	T	L	T	L	T	G	T	G	G	A	Q	G	V	P	A	W	G	C	E	C	A	A	C	A	R	A	R	R	S	P	Q	Y	R	R	Q	P	C	S	G	V	V	K	F	N	D	A	I	T	L	I	D	A	.	.	.	.	.	.	.	.	.	.	.	G	L	H	D	L	A	D	R	.	.	.	.	.	.	.
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.									.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		X	T	Q	Y	T	H	I	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	T	G	K	L	T	I	K	N	T	T	F	L	I	D	P	F	L	A	P	K	D	T	Y	P	G	F	E	G	T	F	N	Y	Q	Q	R	X	P	X	V	D	L
Template Known Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							T	T						S						T	T		B				T	T	B	T	T	T	T	S		B		S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.																														.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.
							64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	W	S	P	G	S	F	Q	Q	F	L	L	T	H	Y	H	M	D	H	V	Q	G	L	F	P	L	R	W	G	V	G	D	P	I	P	V	Y	G	P	P	D	E	Q	G	C	D	D	L	F	K	H	P	G	L	L	D	F	S	H	T	V	E	P	F	V	V	F	D	L	Q	G	L	Q	V	T	P
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.																			.																																						.	.	.	.	.	.
Template Conservation																									.																																						.	.	.	.	.	.
Template Sequence		P	L	S	X	D	D	L	L	S	N	V	T	A	V	V	V	T	H	T	H	L	D	H	.	W	D	D	T	A	I	N	S	I	P	K	S	L	P	I	F	V	Q	N	T	A	D	K	E	L	I	T	S	Q	G	F	I	D	V	R	I	I	.	.	.	.	.	.	F	E	S	L	E	F	N	G	I	T	L	R	K
Template Known Secondary structure		S	S							T	T							S				G	G	G	.	S								S		T	T	S					S	S										T	T		S						.	.	.	.	.	.	S	S					T	T
Template Predicted Secondary structure																									.																																						.	.	.	.	.	.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.							.	.	.	.	.	.	.	.	120	.	.	.	.
		139	140	.	.	.	.																.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190		.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Query Sequence		L	P	L	N	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	T	F	G	Y	L	L	E	T	A	H	S	R	V	A	W	L	S	D	T	A	G	L	P	E	K	T	L	K	F	L	R	N	N	Q	P	Q	V	M	V	M	D	C	S	H	.	P	P	R	A	D	A	P	R	N	H	C	D
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																															.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.																						.
Template Conservation																																															.
Template Sequence		T	G	G	S	H	G	T	V	E	X	Y	A	N	P	V	L	A	P	L	A	G	D	A	X	G	V	I	F	E	A	A	D	E	P	T	V	Y	L	V	G	D	T	V	W	T	.	S	D	V	E	K	A	L	L	R	F	D	P	N	V	I	I	X	N	T	G	Y	A	Q	I	L	G	F	E	D	S	I	I	X	G
Template Known Secondary structure						S	S						T	S	T	T																T	T	S								S			S		.													S							S		B		B	T	T		S	S		S	S
Template Predicted Secondary structure																																															.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.										.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																												.	.	.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.	.	.
Query Sequence		L	N	T	V	L	A	L	N	Q	V	I	R	S	P	R	V	I	L	T	H	I	S	H	Q	F	D	.	.	.	.	.	.	.	.	.	A	W	L	M	E	N	A	L	P	S	G	F	E	V	G	F	D	G	M	E	I	G	V
Query Conservation																												.	.	.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	D	I	G	R	X	V	V	R	K	P	E	A	K	I	I	A	V	H	X	D	T	V	N	H	T	A	T	S	R	K	D	V	R	K	F	I	K	G	N	N	I	E	S	H	V	A	V	P	E	D	G	E	T	I	T	L
Template Known Secondary structure													T	T	S						S		S	S	S	S	S	B														T	T		T	T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions