Job Description P16692 Confidence 99.92% Date Thu Jan 5 11:35:43 GMT 2012 Rank 22 Aligned Residues 186 % Identity 20% Template c2ycbA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:cleavage and polyadenylation specificity factor; PDBTitle: structure of the archaeal beta-casp protein with n-terminal2 kh domains from methanothermobacter thermautotrophicus Resolution 3.10 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.													.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	L	T	L	T	G	T	G	G	A	Q	G	V	P	A	W	G	C	E	C	A	A	C	A	R	A	R	R	S	P	Q	Y	R	R	Q	P	C	S	G	V	V	K	F	N	D	A	I	T	L	I	D	A	G	.	.	.	.	.	.	.	.	.	.	.	.	L	H	D	L	A	D	R	W	S	P	G	S	F	Q
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	L	T	A	M	G	G	F	R	E	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	C	L	Y	L	Q	T	P	N	S	R	V	L	L	D	C	G	V	N	V	A	G	G	D	D	K	N	S	Y	P	Y	L	N	V	P	E	F	T	L	D	S	L	D
Template Known Secondary structure									S	S	S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S	S												S	S							S			T	T	S	T	T			T	T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.																								.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.																					.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	F	L	L	T	H	Y	H	M	D	H	V	Q	G	L	F	P	L	R	W	G	V	G	D	P	I	P	V	Y	G	P	P	D	E	Q	G	C	D	D	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	H	P	G	L	L	D	F	S	H	T	V	E	P	F	V	V	F	D
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.
Template Sequence		A	V	I	I	T	H	A	H	L	D	H	S	G	F	L	P	Y	L	Y	.	H	Y	G	Y	D	G	P	V	Y	C	T	A	P	T	R	D	L	M	T	L	L	Q	L	D	H	I	D	I	A	H	R	E	D	E	P	L	P	F	N	V	K	H	V	K	K	S	V	K	H	T	I	T	L	D	Y	G	E	V	T	D
Template Known Secondary structure						S	S	S	S					T	T						.		T	T			S																											T				S												T						T	T
Template Predicted Secondary structure																					.
Template SS confidence
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		131	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.			.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Predicted Secondary structure				.																									.	.																		.	.
Query SS confidence				.																									.	.																		.	.
Query Sequence		L	Q	.	G	L	Q	V	T	P	L	P	L	N	H	S	K	L	T	F	G	Y	L	L	E	T	A	H	.	.	S	R	V	A	W	L	S	D	T	A	G	L	P	E	K	T	L	.	.	K	F	L	R	N	N	Q	P	Q	V	M	V	M	D	C	S	H	P	P	R	A	D	A	P	R	N	H	C	D	L	N	T
Query Conservation				.																									.	.																		.	.
Alig confidence				.																									.	.																		.	.
Template Conservation
Template Sequence		I	A	P	D	I	R	L	T	L	H	N	A	G	H	I	L	G	S	A	M	A	H	L	H	I	G	D	G	Q	H	N	M	V	Y	T	G	D	F	K	Y	E	Q	S	R	L	L	E	A	A	A	N	R	F	P	R	I	E	T	L	V	M	E	S	T	Y	G	G	H	E	D	V	Q	P	S	R	N	R	A	E	K
Template Known Secondary structure				T	T										S	S	T	T									T	T	T	T	T							S			S	S			S	S	S								S			S							T	T		S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.
		206	.	.	.	210	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	A	L	N	Q	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	L	V	K	T	I	Y
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		396	.	.	.	400	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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