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Job DescriptionP76633
Confidence100.00%DateThu Jan 5 12:25:09 GMT 2012
Rank45Aligned Residues245
% Identity25%Templatec3r3sD_
PDB info PDB header:oxidoreductaseChain: D: PDB Molecule:oxidoreductase; PDBTitle: structure of the ygha oxidoreductase from salmonella enterica
Resolution1.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   15....20.........30.........40.........50.... .....60.........70.........80.........90.
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Query Sequence  SLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDN. . . GETKEMIEKQGVEVDFMQVGITAEGAPQKIIAACCER
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Template Sequence  RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA
Template Known Secondary structure  TTTT
TTTSTT


GGGTT





TTS
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   46...50.........60.........70.........80.........90.........100.........110.........120.....
 
   92.......100.........110.........120.........130.........140.........150.........160.........170.
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Query Sequence  FGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKH
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Template Sequence  LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWI. TQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKA
Template Known Secondary structure  T










SSGGG

T.GGG

TT


GGGTS

TT
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   126...130.........140.........150.........160....... ..170.........180.........190.........200....
 
   172.......180.........190.........200.........210.........220.........230.........240.........250.
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Query Sequence  ALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHL
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Template Sequence  AILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAEV
Template Known Secondary structure  GGGT

SB

TTTS
GGGSTTTTTTSTTSS
B
GGGGSGGGTT

S
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   205....210.........220.........230.........240.........250.........260.........270.........280....
 
   252.......260
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Query Sequence  LVVDGGYLV
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Template Sequence  HGVCGGEHL
Template Known Secondary structure  STT


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   285....290...
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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