Job Description P0ADK6 Confidence 96.98% Date Thu Jan 5 11:21:14 GMT 2012 Rank 49 Aligned Residues 232 % Identity 12% Template c3oc3B_ PDB info PDB header:hydrolase/transcription Chain: B: PDB Molecule:helicase mot1; PDBTitle: crystal structure of the mot1 n-terminal domain in complex with tbp Resolution 3.10 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50										.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.										.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Query Sequence		D	E	L	F	R	L	L	D	D	H	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	R	.	.	.	.	.	.	.	.	.	G	G	Q	D	A	V	R	L	A	I	E	F	C	S	D	K	.	.	.	.	.	.	.	.	.	N	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I	K	I	C	K	K	C
Query Conservation																											.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																																																																																.	.
Template Sequence		E	Q	I	S	D	N	L	L	S	Y	E	W	Y	K	R	H	G	A	F	L	A	F	A	A	M	F	S	E	I	D	Q	I	R	V	D	S	K	L	F	S	K	I	Y	E	I	L	V	T	D	K	F	N	D	F	V	D	D	R	T	V	A	P	V	R	D	A	A	A	Y	L	L	S	R	I	Y	P	L	I	.	.
Template Known Secondary structure								T	T		S	S															T	T	S								S	T	T									T	T	B					T	T	S	S	S																	G	G	G		.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	D	N	V	F	N	I	L	N	N	M	A	L	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	R	C	K	K	N	P	I	Y	S	P	K	I	V	E	Q	S	Q	I	T	A	F	D	K	S	T	N	V	R	R	A	T	A	F	A	I	S	V	I	N	D	K	A	T	I	P	L	L	I	N	L
Query Conservation
Alig confidence																																								.
Template Conservation																																								.
Template Sequence		G	P	N	D	I	I	E	Q	L	V	G	F	L	D	S	G	D	W	Q	V	Q	F	S	G	L	I	A	L	G	Y	L	K	E	F	V	E	D	K	.	D	G	L	C	R	K	L	V	S	L	L	S	S	P	D	E	D	I	K	L	L	S	A	E	L	L	C	H	F	P	I	T	D	S	L	D	L	V	L	E	K
Template Known Secondary structure			S								T	T	G	G	G		S															T	T	T	T					.											T	T		S	S											T	T	T	S			S	T	T
Template Predicted Secondary structure																																								.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		L	K	D	P	N	G	D	V	R	N	W	A	A	F	A	I	N	I	N	K	Y	D	N	S	D	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I	G	L	S	Y	R	K	D	K	R	V	L	S	V	L	C	D	E	L	K	K	N	.	.	T	V	Y	D	D	I	I	E	A	A
Query Conservation																																																																						.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	W	K	N	I	E	S	E	E	L	I	S	V	S	K	T	S	N	L	S	L	L	T	K	I	Y	R	E	N	P	E	L	S	I	P	P	E	R	L	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	P	C	F	T	S	P	V	P	E	V	R	T	S	I	L	N	M	V
Template Known Secondary structure					T	T	T	T			S			T																	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		G	G	G	T	T		S	S											G
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.																				.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	L	G	D	K	T	L	L	P	V	L	D	T	M	L	Y	K	F	D	D	N	E	I	I	T	S	A	I	D	K	L	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	L	S	E	E	S	I	D	F	L	V	A	E	V	V	L	I	E	E	K	D	E	I	R	E	M	A	I	K	L	L	K	K
Template Known Secondary structure		G	G																		S														T
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions