Job Description P0ADK6 Confidence 10.58% Date Thu Jan 5 11:21:14 GMT 2012 Rank 80 Aligned Residues 224 % Identity 12% Template c3ibvB_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:exportin-t; PDBTitle: karyopherin cytosolic state Resolution 3.10 Å

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		25	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.		.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure													.	.																	.																.	.	.																.	.	.	.	.
Query SS confidence													.	.																	.																.	.	.																.	.	.	.	.
Query Sequence		D	D	E	L	F	R	L	L	D	D	H	.	.	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	R	G	.	G	Q	D	A	V	R	L	A	I	E	F	C	S	D	K	.	.	.	N	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I	.	.	.	.	.	K	I	C	K	K	C	E	D	N	V	F	N
Query Conservation													.	.																	.																.	.	.																.	.	.	.	.
Alig confidence													.	.																	.																.	.	.																.	.	.	.	.
Template Conservation
Template Sequence		V	E	N	A	V	E	A	A	L	D	P	S	V	G	P	I	I	K	Q	Q	A	T	D	F	I	G	S	L	R	S	S	S	T	G	W	K	I	C	H	E	I	F	S	E	K	T	K	Y	K	P	S	T	R	L	I	C	L	Q	T	L	S	E	K	V	R	E	W	N	N	E	S	N	L	L	E	L	Q	M	I	R
Template Known Secondary structure												T	T	S		T	T															S	T	T									T	T			S	S	S																					T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		94	.	.	.	.	.	100						.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.			.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.																							.	.
Query SS confidence									.	.	.	.	.																							.	.
Query Sequence		I	L	N	N	M	A	L	.	.	.	.	.	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	R	C	K	K	N	.	.	P	I	Y	S	P	K	I	V	E	Q	S	Q	I	T	A	F	D	K	S	T	N	V	R	R	A	T	A	F	A	I	S	V	I	N	D	K	A	T	I	P	L	L	I	N
Query Conservation									.	.	.	.	.																							.	.
Alig confidence									.	.	.	.	.																							.	.
Template Conservation
Template Sequence		D	S	V	W	S	Y	I	K	E	L	S	F	L	D	E	P	A	Y	I	S	N	A	V	Q	H	L	L	T	L	L	F	L	Q	L	Y	P	S	N	W	N	D	F	F	A	S	L	Q	G	V	I	A	A	S	S	Q	S	E	F	S	N	F	Y	L	K	V	L	L	S	I	G	D	E	I	A	D	S	L	V	L	K
Template Known Secondary structure										S	T	T	S	T	T	S																				T	T	T	T		T	T																																					S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.										.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.
Query Sequence		L	L	K	D	P	N	G	D	V	R	N	W	A	A	F	A	I	N	I	N	K	Y	D	N	S	D	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I	G	L	S	Y	R	K	D	K	.	.	.	.	.	.	.	.	.	R	V	L	S	V	L	C	D	E	L	K	K	N	T	V
Query Conservation																																																										.	.	.	.	.	.	.	.	.
Alig confidence																																																										.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	D	V	Q	I	Q	K	D	N	L	V	K	D	A	I	R	A	N	D	M	S	D	I	V	S	F	V	Y	E	M	M	L	A	Y	S	N	A	K	N	Y	G	T	V	G	L	C	L	Q	V	Y	A	Q	W	V	S	W	I	N	I	N	L	I	V	N	E	P	C	M	N	L	L	Y	S	F	L	Q	I	E	E	L
Template Known Secondary structure																				T																		T	T																T	T	T	S								S									G	G	G	S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	D	D	I	I	E	A	A	G	E	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	C	A	A	C	E	T	M	T	E	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions