Job Description P0ADK6 Confidence 98.46% Date Thu Jan 5 11:21:14 GMT 2012 Rank 28 Aligned Residues 265 % Identity 14% Template c3gq2B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:general vesicular transport factor p115; PDBTitle: crystal structure of the dimer of the p115 tether globular head domain Resolution 2.18 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.						.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.																		.	.	.	.	.	.	.	60	.	.
Predicted Secondary structure																	.	.	.	.	.													.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.													.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	K	A	S	K	E	Y	G	L	Y	N	Q	C	K	.	.	.	.	.	K	L	N	D	D	E	L	F	R	L	L	D	.	.	D	H	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	R	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	A	V	R	L	A	I	E	F
Query Conservation																	.	.	.	.	.													.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.													.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	R	N	A	V	R	A	L	K	S	L	S	K	K	Y	R	L	E	V	G	I	Q	A	M	E	H	L	I	H	V	L	Q	T	D	R	S	D	S	E	I	I	G	Y	A	L	D	T	L	Y	N	I	I	S	N	D	E	E	D	L	G	S	Q	F	T	E	I	F	I	K	Q	Q	E	N	V	T	L	L	L	S	L
Template Known Secondary structure																T																				T	T																			S														S	S	T
Template Predicted Secondary structure
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.								.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.	.	.	.
Query SS confidence																												.	.	.	.	.	.	.
Query Sequence		C	S	D	K	N	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I	K	I	C	K	K	C	E	.	.	.	.	.	.	.	D	N	V	F	N	I	L	N	N	M	A	L	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	R	C	K	K	N	P	I	Y	S	P	K	I	V	E	Q	S	Q	I
Query Conservation																												.	.	.	.	.	.	.
Alig confidence																												.	.	.	.	.	.	.																																							.	.	.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.	.	.
Template Sequence		L	E	E	F	D	F	H	V	R	W	P	G	V	K	L	L	T	S	L	L	K	Q	L	G	P	Q	V	Q	Q	I	I	L	V	S	P	M	G	V	S	R	L	M	D	L	L	A	D	S	R	E	V	I	R	N	D	G	V	L	L	L	Q	A	L	T	R	S	N	G	A	I	Q	.	.	.	.	.	.	.	K	I
Template Known Secondary structure			T																					S											S	T	T							G	G	G	T		S	S																T	T						.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.								.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	F	D	K	S	T	N	V	R	R	A	T	A	F	A	I	S	V	I	N	D	K	A	T	I	P	L	L	I	N	L	L	K	D	P	N	G	D	V	R	N	W	A	A	F	A	I	N	I	N	K	Y	D	N	S	D	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	A	F	E	N	A	F	E	R	L	L	D	I	I	T	E	E	G	N	S	D	G	G	I	V	V	E	D	C	L	I	L	L	Q	N	L	L	K	N	N	N	S	N	Q	N	F	F	K	E	G	S	Y	I	Q	R	M	K	P	W	F	E	V	G	D	E	N	S	G	W	S	A	Q	K	V	T	N	L	H	L	M
Template Known Secondary structure					T	T												T	T	G	G	G	S																T	T											T	T	G	G	G	G	G	G	G	G	G	S			S	S
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.
		216	.																					.	.	220	.	.	.	.	.	.	.	.	.	230	.	.					.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R	K	D	K	R	V	L	S	V	L	C	D	E	L	.	.	.	.	K	K	N	T	V	Y	D	D	I	I	E	A	A	G	E	L	.	.	G	D	K	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.																	.	.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Q	L	V	R	V	L	V	S	P	N	N	P	P	G	A	T	S	S	C	Q	K	A	M	F	Q	C	G	L	L	Q	Q	L	C	T	I	L	M	A	T	G	V	P	A	D	I	L	T	E	T	I	N	T	V	S	E	V	I	R	G	C	Q	V	N	Q	D	Y	F	A	S	V	N	A	P	S	N	P	P	R	P
Template Known Secondary structure									T		T	T	S																T									T	T		S	S																		T	T												B			S	S	S			B
Template Predicted Secondary structure
Template SS confidence
		284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.
				254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	L	P	V	L	D	T	M	L	Y	K	F	D	D	N	E	I	I	T	S	A	I	D	K	L	K
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		A	I	V	V	L	L	M	S	M	V	N	E	R	Q	P	F	V	L	R	C	A	V	L	Y	C	F	Q
Template Known Secondary structure											T		T	T	S
Template Predicted Secondary structure
Template SS confidence
		364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions