Job Description P0ADK6 Confidence 98.45% Date Thu Jan 5 11:21:14 GMT 2012 Rank 30 Aligned Residues 247 % Identity 9% Template c2w3cA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:general vesicular transport factor p115; PDBTitle: globular head region of the human general vesicular2 transport factor p115 Resolution 2.22 Å

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		24	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50												.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.																.	.	.	.	.	.	.	.	.	.	.																																							.	.
Query SS confidence														.	.																.	.	.	.	.	.	.	.	.	.	.																																							.	.
Query Sequence		N	D	D	E	L	F	R	L	L	D	D	H	.	.	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	R	.	.	.	.	.	.	.	.	.	.	.	G	G	Q	D	A	V	R	L	A	I	E	F	C	S	D	K	N	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I	K	I	C	K	K	C	E	.	.
Query Conservation														.	.																.	.	.	.	.	.	.	.	.	.	.																																							.	.
Alig confidence														.	.																.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation
Template Sequence		A	M	E	H	L	I	H	V	L	Q	T	D	R	S	D	S	E	I	I	G	Y	A	L	D	T	L	Y	N	I	I	S	N	S	Q	F	T	E	I	F	I	K	Q	Q	E	N	V	T	L	L	L	S	L	L	E	E	F	D	F	H	V	R	W	P	G	V	K	L	L	T	S	L	L	K	Q	L	G	P	Q	V	Q
Template Known Secondary structure		T	T											T	T																												S	T										T	T																					S
Template Predicted Secondary structure
Template SS confidence
		61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
							89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.										.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	D	N	V	F	N	I	L	N	N	M	A	L	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	R	C	K	K	.	.	.	.	.	.	.	.	.	N	P	I	Y	S	P	K	I	V	E	Q	S	Q	I	T	A	F	D	K	S	T	N	V	R	R	A	T	A	F	A	I	S	V
Query Conservation		.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																		.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	I	I	L	V	S	P	M	G	V	S	R	L	M	D	L	L	A	D	S	R	E	V	I	R	N	D	G	V	L	L	L	Q	A	L	T	R	S	N	G	A	I	Q	K	I	V	A	F	E	N	A	F	E	R	L	L	D	I	I	S	E	E	G	N	S	D	G	G	I	V	V	E	D	C	L	I	L	L	Q	N
Template Known Secondary structure							S	T	T							G	G	G	G		S	S																T	T											T	T												T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		155	.	.	.	.	160												.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	D	K	A	T	.	.	.	.	.	.	.	.	.	.	.	I	P	L	L	I	N	L	L	K	D	P	N	G	D	V	R	N	W	A	A	F	A	I	N	I	N	K	Y	D	N	S	D	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I	G	L	S	Y	R	K	D	K	R
Query Conservation								.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.																																																									.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		L	L	K	N	N	N	S	N	Q	N	F	F	K	E	G	S	Y	I	Q	R	M	K	P	W	F	E	V	G	W	S	A	Q	K	V	T	N	L	H	L	M	L	Q	L	V	R	V	L	V	S	P	T	N	P	P	G	A	T	S	S	C	Q	K	A	M	F	Q	C	G	L	L	Q	Q	L	.	.	.	.	.	.	.
Template Known Secondary structure				T	T											T	T		G	G	G	G	S	G	G	G																							T		T	T	S															T	T						.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.																	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query SS confidence																											.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Query Sequence		V	L	S	V	L	C	D	E	L	K	K	N	T	V	Y	D	D	I	I	E	A	A	G	E	L	.	.	G	D	K	T	L	L	P	V	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	M	L	Y	K	F	D	D	N	.	E	I	I	T	S	A	I	D	K	L	K
Query Conservation																											.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Alig confidence		.																									.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation		.
Template Sequence		.	C	T	I	L	M	A	T	G	V	P	A	D	I	L	T	E	T	I	N	T	V	S	E	V	I	R	G	C	Q	V	N	Q	D	Y	F	A	S	V	N	A	P	S	P	P	R	P	A	I	V	V	L	L	M	S	M	V	N	E	R	Q	P	F	V	L	R	C	A	V	L	Y	C	F	Q
Template Known Secondary structure		.							S	S																		T	T										T																			T		T	T	S
Template Predicted Secondary structure		.
Template SS confidence
			317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions