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Job DescriptionP0ADK6
Confidence98.16%DateThu Jan 5 11:21:14 GMT 2012
Rank36Aligned Residues263
% Identity15%Templatec2ot8B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:transportin-1; PDBTitle: karyopherin beta2/transportin-hnrnpm nls complex
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   16...20.........30.........40.........50 .........60.........70.........80........
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Query Sequence  LYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLR. . . . . . . GGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE
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Template Sequence  FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEP
Template Known Secondary structure  S
SSTTTTT
SSTTTTTT
STTTTTS
S


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   83......90.........100.........110.........120.........130.........140.........150.........160..
 
   8990.........100.........110.........120..... ....130.........140.........150......
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Query Sequence  DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY. . . . SPKIVEQSQITAFDKSTNVRRATAFAISVIN. . . . . . . .
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Template Sequence  LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL
Template Known Secondary structure  GGGGTT
S
GGGTTTT
TSS
S

G
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   172.......180.........190.........200.........210.........220.........230.........240.........250.
 
   157..160.........170.........180.........190.........200.... .....
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Query Sequence  . . DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDK. . . . . . . . . . . . . . . . . . . . . . . . . NEEVR
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Template Conservation                              
                   
   
                           
Template Sequence  PHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKDTISDWNLRKCS
Template Known Secondary structure  GGT
SSTSTTGGGTTS
TT





SS
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   252.......260.........270.........280.........290.........300.........310.........320.........330.
 
   210.........220.........230.. .......240.........250 .........260.........270...
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Query Sequence  IEAIIGLSYRKDKRVLSVLCDEL. . . . . . KKNTVYDDIIEAAGELGD. . . . . . . . . . KTLLPVLDTMLYKFDDNEIITSA
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Template Conservation     
  
                                  
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Template Sequence  AAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSD. KKALVRSIT
Template Known Secondary structure  S
GGGS
SSTGGGTT
.SS
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   380.........390.........400.........410.........420.........430.........440......... 450........
 
   274.....
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Query Sequence  IDKLKR
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Template Conservation     
  
Template Sequence  CWTLSR
Template Known Secondary structure  T
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   459460....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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