Job Description P0ADK6 Confidence 99.23% Date Thu Jan 5 11:21:14 GMT 2012 Rank 12 Aligned Residues 256 % Identity 10% Template c2jkrL_ PDB info PDB header:endocytosis Chain: L: PDB Molecule:ap-2 complex subunit alpha-2; PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse Resolution 2.98 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.							.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.																												.	.
Query SS confidence																																											.	.	.	.	.	.																												.	.
Query Sequence		N	D	D	E	L	F	R	L	L	D	D	H	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	R	G	G	Q	D	A	V	R	L	A	I	E	F	C	S	.	.	.	.	.	.	D	K	N	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I	K	I	C	K	K	C	E	D	N	V	.	.	F	N	I	L
Query Conservation																																											.	.	.	.	.	.																												.	.
Alig confidence																																											.	.	.	.	.	.																												.	.
Template Conservation
Template Sequence		I	N	N	A	I	K	N	D	L	A	S	R	N	P	T	F	M	G	L	A	L	H	C	I	A	N	V	G	S	R	E	M	A	E	A	F	A	G	E	I	P	K	I	L	V	A	G	D	T	M	D	S	V	K	Q	S	A	A	L	C	L	L	R	L	Y	R	T	S	P	D	L	V	P	M	G	D	W	T	S	R
Template Known Secondary structure												S																										T	T									T	T	S																				T	T	T	S				T
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	N	M	A	L	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	R	C	K	K	N	P	I	Y	S	P	K	I	V	E	Q	S	Q	I	T	A	F	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	N	V	R	R	A	T	A	F	A	I	S	V	I	N	D	K
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	H	L	L	N	D	Q	H	L	G	V	V	T	A	A	T	S	L	I	T	T	L	A	Q	K	N	P	E	E	F	K	T	S	V	S	L	A	V	S	R	L	S	R	I	V	T	S	A	S	T	D	L	Q	D	Y	T	Y	Y	F	V	P	A	P	W	L	S	V	K	L	L	R	L	L	Q	C	Y	P	P	P
Template Known Secondary structure				G	G	G	G		S	S															T	T	T						T														T	T	S		S	S	S	S	T	T	T			T	T			S												T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		159	160	.	.	.	.	.	.	.	.	.	170																									.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	T	I	P	L	L	I	N	L	L	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	G	D	V	R	N	W	A	A	F	A	I	N	I	N	K	Y	D	N	S	D	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	D	P	A	V	R	G	R	L	T	E	C	L	E	T	I	L	N	K	A	Q	E	P	P	K	S	K	K	V	Q	H	S	N	A	K	N	A	V	L	F	E	A	I	S	L	I	I	H	H	D	S	E	P	N	L	L	V	R	A	C	N	Q	L	G	Q	F	L	Q	H	R	E	T	N	L	R	Y	L	A	L	E
Template Known Secondary structure		S	S																				S			S			S																																									S	S		S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		215	.	.	.	.	220	.	.												.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.																																										.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.																																										.	.	.
Query Sequence		G	L	S	Y	R	K	D	K	.	.	.	.	.	.	.	.	.	.	.	R	V	L	S	V	L	C	D	E	L	K	K	N	T	V	Y	D	D	I	I	E	A	A	G	E	L	G	D	K	T	L	L	P	V	L	D	T	M	L	Y	K	.	.	.	F	D	D	N	E	I	I	T	S	A	I	D	K	L	K	R
Query Conservation										.	.	.	.	.	.	.	.	.	.	.																																										.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.																																										.	.	.
Template Conservation
Template Sequence		S	M	C	T	L	A	S	S	E	F	S	H	E	A	V	K	T	H	I	E	T	V	I	N	A	L	K	T	E	R	D	V	S	V	R	Q	R	A	V	D	L	L	Y	A	M	C	D	R	S	N	A	Q	Q	I	V	A	E	M	L	S	Y	L	E	T	A	D	Y	S	I	R	E	E	I	V	L	K	V	A	I
Template Known Secondary structure							T	T		S	S	S		S	G	G	G	G	G													S													T	T			T	T	T														T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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