Job Description P0ADK6 Confidence 98.10% Date Thu Jan 5 11:21:14 GMT 2012 Rank 38 Aligned Residues 253 % Identity 15% Template c2jdqB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:importin alpha-1 subunit; PDBTitle: c-terminal domain of influenza a virus polymerase pb22 subunit in complex with human importin alpha5 Resolution 2.2 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.														50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.																.																									.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.																.																									.	.	.
Query Sequence		D	E	L	F	R	L	L	D	D	H	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	G	Q	D	A	V	R	L	A	I	E	F	C	S	.	D	K	N	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I	K	I	C	K	K	C	E	.	.	.
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.																.																									.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.																.																									.	.	.
Template Conservation
Template Sequence		S	D	M	I	E	M	I	F	S	K	S	P	E	Q	Q	L	S	A	T	Q	K	F	R	K	L	L	S	K	E	P	N	P	P	I	D	E	V	I	S	T	P	G	V	V	A	R	F	V	E	F	L	K	R	K	E	N	C	T	L	Q	F	E	S	A	W	V	L	T	N	I	A	S	G	N	S	L	Q	T	R	I
Template Known Secondary structure									S	S	S																T	T	S	S	S									T	S	T	T									T	T		T	T																	S	S
Template Predicted Secondary structure
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
				89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.						.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.																																									.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																																									.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	D	N	V	F	N	I	L	N	N	M	A	L	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	R	C	K	K	N	P	I	Y	S	P	K	.	.	.	.	.	I	V	E	Q	S	Q	I	T	A	F	D	K	S	T	N	V	R	R	A	T	A	F	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.																																									.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																									.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	I	Q	A	G	A	V	P	I	F	I	E	L	L	S	S	E	F	E	D	V	Q	E	Q	A	V	W	A	L	G	N	I	A	G	D	S	T	M	C	R	D	Y	V	L	D	C	N	I	L	P	P	L	L	Q	L	F	S	K	Q	N	R	L	T	M	T	R	N	A	V	W	A	L	S	N	L	C	R	G	K	S
Template Known Secondary structure					T	T									T	T		S																	T	T											T	T								T	T	S	S																					S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
			151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.										.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure		.																																											.	.	.	.	.	.	.	.	.
Query SS confidence		.																																											.	.	.	.	.	.	.	.	.
Query Sequence		.	A	I	S	V	I	N	D	K	A	T	I	P	L	L	I	N	L	L	K	D	P	N	G	D	V	R	N	W	A	A	F	A	I	N	I	N	K	Y	D	N	S	D	.	.	.	.	.	.	.	.	.	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I	G	L	S	Y	R	K
Query Conservation		.																																											.	.	.	.	.	.	.	.	.
Alig confidence		.																																											.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	P	P	E	F	A	K	V	S	P	C	L	N	V	L	S	W	L	L	F	V	S	D	T	D	V	L	A	D	A	C	W	A	L	S	Y	L	S	D	G	P	N	D	K	I	Q	A	V	I	D	A	G	V	C	R	R	L	V	E	L	L	M	H	N	D	Y	K	V	V	S	P	A	L	R	A	V	G	N	I	V
Template Known Secondary structure		S								G	G	G								T	T																		T	S	S											T	T	T							G	G	G		S																T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
													221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250												.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																	.	.															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																	.	.															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	D	K	R	V	L	S	V	L	C	D	E	L	K	K	N	T	.	.	V	Y	D	D	I	I	E	A	A	G	E	L	G	D	.	.	.	.	.	.	.	.	.	.	.	K	T	L	L	P	V	L	D	T	M	L	Y	K	F	D	D	N	E	I	I	T	S	A	I	D	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																	.	.															.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																	.	.															.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation																																																																					.
Template Sequence		T	G	D	D	I	Q	T	Q	V	I	L	N	C	S	A	L	Q	S	L	L	H	L	L	S	S	P	K	E	S	I	K	K	E	A	C	W	T	I	S	N	I	T	A	G	N	R	A	Q	I	Q	T	V	I	D	A	N	I	F	P	A	L	I	S	I	L	Q	T	.	A	E	F	R	T	R	K	E	A	A	W	A
Template Known Secondary structure		T	S										T	T	T									T	T		S	S															T	T	S											T	T												.	S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.
		277	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	T	N
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		404	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions