Job Description P0ADK6 Confidence 98.19% Date Thu Jan 5 11:21:14 GMT 2012 Rank 35 Aligned Residues 253 % Identity 17% Template c2c1tA_ PDB info PDB header:protein transport/membrane protein Chain: A: PDB Molecule:importin alpha subunit; PDBTitle: structure of the kap60p:nup2 complex Resolution 2.6 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.													.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.																.																						.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.																.																						.	.	.
Query Sequence		D	D	E	L	F	R	L	L	D	D	H	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	R	G	G	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	A	V	R	L	A	I	E	F	C	S	D	K	N	.	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I	K	I	C	K	K	C	E	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.																.																						.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.																.																						.	.	.
Template Conservation
Template Sequence		L	P	Q	M	T	Q	Q	L	N	S	D	D	M	Q	E	Q	L	S	A	T	V	K	F	R	Q	I	L	S	R	E	H	R	P	P	I	D	V	V	I	Q	A	G	V	V	P	R	L	V	E	F	M	R	E	N	Q	P	E	M	L	Q	L	E	A	A	W	A	L	T	N	I	A	S	G	T	S	A	Q	T	K	V
Template Known Secondary structure									T	T		S																T	T		S	S	S									T	T								T	T	S	T	T	S																	T	S
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
				89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.						130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																										.	.	.	.	.																													.	.	.	.
Query SS confidence		.	.																																										.	.	.	.	.																													.	.	.	.
Query Sequence		.	.	D	N	V	F	N	I	L	N	N	M	A	L	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	R	C	K	K	N	P	I	Y	S	P	K	I	.	.	.	.	.	V	E	Q	S	Q	I	T	A	F	D	K	S	T	N	V	R	R	A	T	A	F	A	I	S	V	I	N	D	.	.	.	.
Query Conservation		.	.																																										.	.	.	.	.																													.	.	.	.
Alig confidence		.	.																																										.	.	.	.	.																													.	.	.	.
Template Conservation
Template Sequence		V	V	D	A	D	A	V	P	L	F	I	Q	L	L	Y	T	G	S	V	E	V	K	E	Q	A	I	W	A	L	G	N	V	A	G	D	S	T	D	Y	R	D	Y	V	L	Q	C	N	A	M	E	P	I	L	G	L	F	N	S	N	K	P	S	L	I	R	T	A	T	W	T	L	S	N	L	C	R	G	K	K	P
Template Known Secondary structure					T	T												S																													T	T							G	G	G	G	S																				S	T	T
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
									158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.										.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure		.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	K	A	T	I	P	L	L	I	N	L	L	K	D	P	N	G	D	V	R	N	W	A	A	F	A	I	N	I	N	K	Y	D	N	S	D	.	.	.	.	.	.	.	.	.	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I	G	L	S	Y	R	K	D
Query Conservation		.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	P	D	W	S	V	V	S	Q	A	L	P	T	L	A	K	L	I	Y	S	M	D	T	E	T	L	V	D	A	C	W	A	I	S	Y	L	S	D	G	P	Q	E	A	I	Q	A	V	I	D	V	R	I	P	K	R	L	V	E	L	L	S	H	E	S	T	L	V	Q	T	P	A	L	R	A	V	G	N	I	V	T
Template Known Secondary structure									G	G	G								T	T		S																	S	S											T	T									T	T		S																T	T
Template Predicted Secondary structure
Template SS confidence
		249	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		222	.												.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250												.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.														.	.															.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.														.	.															.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	R	.	.	.	.	.	.	.	.	.	.	.	V	L	S	V	L	C	D	E	L	K	K	N	T	.	.	V	Y	D	D	I	I	E	A	A	G	E	L	G	D	.	.	.	.	.	.	.	.	.	.	.	K	T	L	L	P	V	L	D	T	M	L	Y	K	F	D	D	N	E	I	I	T	S	A	I	D	K	L
Query Conservation				.	.	.	.	.	.	.	.	.	.	.														.	.															.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.														.	.															.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation																																																																				.
Template Sequence		G	N	D	L	Q	T	Q	V	V	I	N	A	G	V	L	P	A	L	R	L	L	L	S	S	P	K	E	N	I	K	K	E	A	C	W	T	I	S	N	I	T	A	G	N	T	E	Q	I	Q	A	V	I	D	A	N	L	I	P	P	L	V	K	L	L	E	V	.	A	E	D	K	T	K	K	E	A	C	W	A	I
Template Known Secondary structure		S											T	T									T	T		S	S													T	T	T	T	S											T	T												.	S
Template Predicted Secondary structure																																																																				.
Template SS confidence
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.
		278
Predicted Secondary structure
Query SS confidence
Query Sequence		K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		408

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions