Job Description P0ADK6 Confidence 99.40% Date Thu Jan 5 11:21:14 GMT 2012 Rank 10 Aligned Residues 255 % Identity 13% Template c1w63A_ PDB info PDB header:endocytosis Chain: A: PDB Molecule:adapter-related protein complex 1 gamma 1 PDBTitle: ap1 clathrin adaptor core Resolution 4.0 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.
Query SS confidence																																		.	.	.	.
Query Sequence		N	D	D	E	L	F	R	L	L	D	D	H	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	R	G	G	Q	D	A	.	.	.	.	V	R	L	A	I	E	F	C	S	D	K	N	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I	K	I	C	K	K	C	E	D	N	V	F	N	I	L	N	N	M	A
Query Conservation																																		.	.	.	.
Alig confidence																																		.	.	.	.
Template Conservation
Template Sequence		M	T	N	C	I	K	N	D	L	N	H	S	T	Q	F	V	Q	G	L	A	L	C	T	L	G	C	M	G	S	S	E	M	C	R	D	L	A	G	E	V	E	K	L	L	K	T	S	N	S	Y	L	R	K	K	A	A	L	C	A	V	H	V	I	R	K	V	P	E	L	M	E	M	F	L	P	A	T	K	N	L
Template Known Secondary structure											S		S	S	S																																S																					G	G	G	G	G	G	G	G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140																			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Query Sequence		L	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	R	C	K	K	N	P	I	Y	S	P	K	I	V	E	Q	S	Q	I	T	A	F	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	T	N	V	R	R	A	T	A	F	A	I	S	V	I	N	D	K	A	.	.
Query Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Alig confidence																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation
Template Sequence		L	N	E	K	N	H	G	V	L	H	T	S	V	V	L	L	T	E	M	C	E	R	S	P	D	M	L	A	H	F	R	K	L	V	P	Q	L	V	R	I	L	K	N	L	I	M	S	G	Y	S	P	E	H	D	V	S	G	I	S	D	P	F	L	Q	V	R	I	L	R	L	L	R	I	L	G	R	N	D	D	D
Template Known Secondary structure		T	T																				S										T	T														S				T	T	T		S	S	S	S	S																T	T	T
Template Predicted Secondary structure
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
						160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.										.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure		.	.	.	.																												.	.	.	.	.	.	.	.	.																																					.	.	.	.
Query SS confidence		.	.	.	.																												.	.	.	.	.	.	.	.	.																																					.	.	.	.
Query Sequence		.	.	.	.	T	I	P	L	L	I	N	L	L	K	D	P	N	G	D	V	R	N	W	A	A	F	A	I	N	I	N	.	.	.	.	.	.	.	.	.	K	Y	D	N	S	D	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I	G	L	S	Y	R	K	D	K	.	.	.	.
Query Conservation		.	.	.	.																												.	.	.	.	.	.	.	.	.																																					.	.	.	.
Alig confidence		.	.	.	.																												.	.	.	.	.	.	.	.	.																																					.	.	.	.
Template Conservation
Template Sequence		S	S	E	A	M	N	D	I	L	A	Q	V	A	T	N	T	E	T	S	K	N	V	G	N	A	I	L	Y	E	T	V	L	T	I	M	D	I	K	S	E	S	G	L	R	V	L	A	I	N	I	L	G	R	F	L	L	N	N	D	K	N	I	R	Y	V	A	L	T	S	L	L	K	T	V	Q	T	D	H	N	A
Template Known Secondary structure					T	T										T	S			S	S	T																S																			T		S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
				223	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.															.	.															.	.	.	.
Query SS confidence		.	.															.	.															.	.	.	.
Query Sequence		.	.	R	V	L	S	V	L	C	D	E	L	K	K	N	T	.	.	V	Y	D	D	I	I	E	A	A	G	E	L	G	D	.	.	.	.	K	T	L	L	P	V	L	D	T	M	L	Y	K	F	D	D	N	E	I	I	T	S	A	I	D	K	L	K	R
Query Conservation		.	.															.	.															.	.	.	.
Alig confidence		.	.															.	.															.	.	.	.														.
Template Conservation																																																			.
Template Sequence		V	Q	R	H	R	S	T	I	V	D	C	L	K	D	L	D	V	S	I	K	R	R	A	M	E	L	S	F	A	L	V	N	G	N	N	I	R	G	M	M	K	E	L	L	Y	F	L	D	S	.	C	E	P	E	F	K	A	D	C	A	S	G	I	F	L
Template Known Secondary structure			G	G	G							G	G	G	S	S																		S	S	S	T														.
Template Predicted Secondary structure																																																			.
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.		.	.	.	.	.	.	.	.	400	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions