Job Description P0ADK6 Confidence 98.38% Date Thu Jan 5 11:21:14 GMT 2012 Rank 31 Aligned Residues 259 % Identity 16% Template c1pjmB_ PDB info PDB header:protein transport Chain: B: PDB Molecule:importin alpha-2 subunit; PDBTitle: mouse importin alpha-bipartite nls from human2 retinoblastoma protein complex Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.													.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.															.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.															.
Query Sequence		C	K	K	L	N	D	D	E	L	F	R	L	L	D	D	H	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	R	G	G	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	A	V	R	L	A	I	E	F	C	S	D	K	.	N	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I	K	I	C	K	K
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.															.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation
Template Sequence		T	V	N	W	S	V	E	D	I	V	K	G	I	N	S	N	N	L	E	S	Q	L	Q	A	T	Q	A	A	R	K	L	L	S	R	E	K	Q	P	P	I	D	N	I	I	R	A	G	L	I	P	K	F	V	S	F	L	G	K	T	D	C	S	P	I	Q	F	E	S	A	W	A	L	T	N	I	A	S	G	T	S
Template Known Secondary structure		T	S	S												S	S																T	T	S	S	S										T	T										T		G	G	G																T	S
Template Predicted Secondary structure
Template SS confidence
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
							87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	C	E	D	N	V	F	N	I	L	N	N	M	A	L	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	Q	T	K	A	V	V	D	G	G	A	I	P	A	F	I	S	L	L	A	S	P	H	A	H	I	S	E	Q	A	V	W	A	L	G	N	I	A	G	D	G	S	A	F	R	D	L	V	I	K	H	G	A	I	D	P	L	L	A	L	L	A	V	P	D	L	S	T	L	A	C	G	Y	L	R	N	L	T	W	T
Template Known Secondary structure										T	T									T	T		S																		T											T	T									T		S	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
										118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.												.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	R	C	K	K	N	P	I	Y	S	P	K	I	V	E	Q	S	Q	I	T	A	F	D	K	S	T	N	V	R	R	A	T	A	F	A	I	S	V	I	N	.	.	.	.	.	.	.	.	.	.	.	D	K	A	T	I	P	L	L	I	N	L	L	K	D	P	N	G	D	V	R	N	W
Query Conservation		.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	N	L	C	R	N	K	N	P	A	P	P	L	D	A	V	E	Q	I	L	P	T	L	V	R	L	L	H	H	N	D	P	E	V	L	A	D	S	C	W	A	I	S	Y	L	T	D	G	P	N	E	R	I	E	M	V	V	K	K	G	V	V	P	Q	L	V	K	L	L	G	A	T	E	L	P	I	V	T	P
Template Known Secondary structure						S				S	S																		T	T		S																T	S	S										T	T	T										T		S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		179	180	.	.	.	.										.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220												.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.																	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.																	.	.
Query Sequence		A	A	F	A	I	N	.	.	.	.	.	.	.	.	.	I	N	K	Y	D	N	S	D	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I	G	L	S	Y	R	K	.	.	.	.	.	.	.	.	.	.	.	D	K	R	V	L	S	V	L	C	D	E	L	K	K	N	T	.	.
Query Conservation								.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.																	.	.
Alig confidence								.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.																	.	.
Template Conservation
Template Sequence		A	L	R	A	I	G	N	I	V	T	G	T	D	E	Q	T	Q	K	V	I	D	A	G	A	L	A	V	F	P	S	L	L	T	N	P	K	T	N	I	Q	K	E	A	T	W	T	M	S	N	I	T	A	G	R	Q	D	Q	I	Q	Q	V	V	N	H	G	L	V	P	F	L	V	G	V	L	S	K	A	D	F	K
Template Known Secondary structure										T	T	S											T	T	G	G	G	G					T	T		S	S															T	T	S											T	T											S	S
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250													.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	Y	D	D	I	I	E	A	A	G	E	L	G	D	.	.	.	.	.	.	.	.	.	.	.	.	K	T	L	L	P	V	L	D	T	M	L	Y	K	F	D	D	N	E	I	I	T	S	A	I	D	K	L	K	R
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation																																									.
Template Sequence		T	Q	K	E	A	A	W	A	I	T	N	Y	T	S	G	G	T	V	E	Q	I	V	Y	L	V	H	C	G	I	I	E	P	L	M	N	L	L	S	A	.	K	D	T	K	I	I	Q	V	I	L	D	A	I	S	N
Template Known Secondary structure																	S											T	T									T	T		.	S
Template Predicted Secondary structure																																									.
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions