Job Description P0ADK6 Confidence 98.98% Date Thu Jan 5 11:21:14 GMT 2012 Rank 18 Aligned Residues 263 % Identity 10% Template c1m5nS_ PDB info PDB header:protein transport Chain: S: PDB Molecule:importin beta-1 subunit; PDBTitle: crystal structure of heat repeats (1-11) of importin b2 bound to the non-classical nls(67-94) of pthrp Resolution 2.90 Å

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		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.			.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.													.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																						.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Y	N	Q	C	K	K	L	N	D	D	E	L	F	R	L	L	D	D	H	.	.	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	R	G	G	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	A	V	R	L	A	I	E	F	C	S	D	K	N	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I
Query Conservation																						.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	Q	D	K	S	N	E	I	L	T	A	I	I	Q	G	M	R	K	E	E	P	S	N	N	V	K	L	A	A	T	N	A	L	L	N	S	L	E	F	T	K	A	N	F	D	K	E	S	E	R	H	F	I	M	Q	V	V	C	E	A	T	Q	C	P	D	T	R	V	R	V	A	A	L	Q	N	L	V	K	I
Template Known Secondary structure				T	T	T														S	S		S																G	G	G							S														G	G	G		S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
							82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140							.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure		.	.	.	.	.																																																												.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																																																												.	.	.	.	.	.
Query Sequence		.	.	.	.	.	K	I	C	K	K	C	E	D	N	V	F	N	I	L	N	N	M	A	L	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	R	C	K	K	N	P	I	Y	S	P	K	I	V	E	Q	S	Q	I	T	A	F	D	K	.	.	.	.	.	.	S	T	N	V	R	R	A	T	A	F
Query Conservation		.	.	.	.	.																																																												.	.	.	.	.	.
Alig confidence		.	.	.	.	.																																																												.	.	.	.	.	.
Template Conservation
Template Sequence		M	S	L	Y	Y	Q	Y	M	E	T	Y	M	G	P	A	L	F	A	I	T	I	E	A	M	K	S	D	I	D	E	V	A	L	Q	G	I	E	F	W	S	N	V	C	D	E	E	M	D	L	A	I	E	A	S	E	A	A	E	Q	G	R	P	P	E	H	T	S	K	F	Y	A	K	G	A	L	Q	Y	L	V	P
Template Known Secondary structure						T	T	G	G	G	G	T	T	T	T	T									T	T		S	S																												T	T	T	T	T	S			S	S
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		A	I	S	V	I	N	D	K	A	T	I	P	L	L	I	N	L	L	K	D	P	N	G	D	V	R	N	W	A	A	F	A	I	N	I	N	K	Y	D	N	S	D	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I	G	L	S	Y	R	K	D	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																																																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	T	Q	T	L	T	K	Q	D	E	N	D	D	D	D	D	W	N	P	C	K	A	A	G	V	C	L	M	L	L	A	T	C	C	E	D	D	I	V	P	H	V	L	P	F	I	K	E	H	I	K	N	P	D	W	R	Y	R	D	A	A	V	M	A	F	G	C	I	L	E	G	P	E	P	S	Q	L	K	P
Template Known Secondary structure							T	T				S	S			S	S																			T		T	T										G	G	G	S	S		S	S	T													T	T	S	S	S		G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
				222	.	.	.	.	.	.	.	230	.	.	.	.	.	.			.	.	.	240	.	.	.	.	.	.	.	.	.									250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																.	.														.	.	.	.	.	.	.	.															.	.
Query SS confidence		.	.																.	.														.	.	.	.	.	.	.	.															.	.
Query Sequence		.	.	K	R	V	L	S	V	L	C	D	E	L	K	K	N	T	.	.	V	Y	D	D	I	I	E	A	A	G	E	L	G	.	.	.	.	.	.	.	.	D	K	T	L	L	P	V	L	D	T	M	L	Y	K	.	.	F	D	D	N	E	I	I	T	S	A	I	D	K	L	K
Query Conservation		.	.																.	.														.	.	.	.	.	.	.	.															.	.
Alig confidence		.	.																.	.														.	.	.	.	.	.	.	.															.	.
Template Conservation
Template Sequence		L	V	I	Q	A	M	P	T	L	I	E	L	M	K	D	P	S	V	V	V	R	D	T	A	A	W	T	V	G	R	I	C	E	L	L	P	E	A	A	I	N	D	V	Y	L	A	P	L	L	Q	C	L	I	E	G	L	S	A	E	P	R	V	A	S	N	V	C	W	A	F	S
Template Known Secondary structure												T	T	T	T		S	S																	S		S	G	G	G	S																	T	S
Template Predicted Secondary structure
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions