Job Description P0ADK6 Confidence 98.09% Date Thu Jan 5 11:21:14 GMT 2012 Rank 39 Aligned Residues 241 % Identity 10% Template c1lshA_ PDB info PDB header:lipid binding protein Chain: A: PDB Molecule:lipovitellin (lv-1n, lv-1c); PDBTitle: lipid-protein interactions in lipovitellin Resolution 1.90 Å

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		11	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.
Query SS confidence																																																											.	.
Query Sequence		S	K	E	Y	G	L	Y	N	Q	C	K	K	L	N	D	D	E	L	F	R	L	L	D	D	H	N	S	L	K	R	I	S	S	A	R	V	L	Q	L	R	G	G	Q	D	A	V	R	L	A	I	E	F	C	S	D	K	N	.	.	Y	I	R	R	D	I	G	A	F	I	L	G	Q	I	K	I	C	K	K	C	E
Query Conservation																																																											.	.
Alig confidence																										.																																	.	.
Template Conservation																										.
Template Sequence		L	R	L	T	A	F	L	R	N	V	D	A	G	V	L	Q	S	I	W	H	K	L	H	Q	.	Q	K	D	Y	R	R	W	I	L	D	A	V	P	A	M	A	T	S	E	A	L	L	F	L	K	R	T	L	A	S	E	Q	L	T	S	A	E	A	T	Q	I	V	A	S	T	L	S	N	Q	Q	A	T	R	E	S
Template Known Secondary structure									T	T	S													T	T	.	S																S													T	T		S															T
Template Predicted Secondary structure																										.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.		.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.									.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.
Query Sequence		D	N	V	F	N	I	L	N	N	M	A	L	N	D	K	S	A	C	V	R	A	T	A	I	E	S	T	A	Q	R	.	.	.	.	.	.	.	.	C	K	K	N	P	I	Y	S	P	K	I	V	E	Q	S	Q	I	T	A	F	D	K	S	T	N	V	R	R	A	T	A	F	A	I	S	V	I	N	D	K	A	T
Query Conservation																																.	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	S	Y	A	R	E	L	L	N	T	S	F	I	R	N	R	P	I	L	R	K	T	A	V	L	G	Y	G	S	L	V	F	R	Y	C	A	N	T	V	S	C	P	D	E	L	L	Q	P	L	H	D	L	L	S	Q	S	S	D	R	A	K	E	E	E	I	V	L	A	L	K	A	L	G	N	A	G	Q	P	N	S
Template Known Secondary structure										T						T																					T	T		S	S			G	G	G	T													T	T																T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.								.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.
Query Sequence		I	P	L	L	I	N	L	L	K	D	P	N	G	D	V	R	N	W	A	A	F	A	I	N	I	N	K	Y	D	N	S	D	I	R	D	C	F	V	E	M	L	Q	D	K	N	E	E	V	R	I	E	A	I	I	G	L	S	Y	R	K	D	.	.	.	.	.	.	.	K	R	V	L	S	V	L	C	D	E	L	K
Query Conservation																																																															.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	K	K	I	Q	R	F	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	Q	G	K	S	L	D	E	Y	S	T	R	V	Q	A	E	A	I	M	A	L	R	N	I	A	K	R	D	P	R	K	V	Q	E	I	V	L	P	I	F	L	N	V	A	I
Template Known Secondary structure							T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S	S					S											T	T	T	T	G	G	G	T																T	T	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		489	490	.	.	.	.	.	.																											.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.
Query SS confidence																	.
Query Sequence		K	N	T	V	Y	D	D	I	I	E	A	A	G	E	L	.	G	D	K	T	L	L	P	V	L	D	T	M	L	Y	K	F	D	D	N	E	I	I	T	S	A	I	D	K	L	K
Query Conservation																	.
Alig confidence																	.
Template Conservation
Template Sequence		K	S	E	L	R	I	R	S	C	I	V	F	F	E	S	K	P	S	V	A	L	V	S	M	V	A	V	R	L	R	R	E	P	N	L	Q	V	A	S	F	V	Y	S	Q	M	R
Template Known Secondary structure																T															T	T		S
Template Predicted Secondary structure
Template SS confidence
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions