Job Description P0A6U3 Confidence 99.00% Date Thu Jan 5 11:03:55 GMT 2012 Rank 192 Aligned Residues 159 % Identity 26% Template c3q9tB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:choline dehydrogenase and related flavoproteins; PDBTitle: crystal structure analysis of formate oxidase Resolution 2.24 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.		.	.	30	.	.	.	.	.	.	.	.	.	40
Predicted Secondary structure																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	P	F	D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	.	M	G	Q	Q	T	L	L	L	T	H	N	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	H	F	D	F	V	I	V	G	G	G	T	A	G	N	T	V	A	G	R	L	A	E	N	P	N	V	T	V	L	I	V	E	A	G	I	G	N	P	E	D	I	P	E	I	T	T	P	S	S	A	M	D	L	R	N	S	K	Y	D	W	A	Y	K	T	T	M	V	R	R	D	D	Y	E	R	I	E	K	P	N
Template Known Secondary structure										S		S											T	T	S	T	T	S							S	S		S		G	G	G						S	G	G	G	G	G	G	G	T	T	S	T	T	B											T	T
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
							41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.				.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.														.	.	.	.
Predicted Secondary structure		.	.	.	.	.																													.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																													.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	T	L	G	Q	M	S	C	N	P	A	I	G	G	I	G	K	G	H	L	V	K	E	V	D	A	L	G	G	.	.	.	L	M	A	K	A	I	D	Q	A	G	I	Q	F	R	I	L	N	A	S	K	G	P	A	V	R	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	Q	A
Query Conservation		.	.	.	.	.																													.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																													.	.	.																												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	G	K	T	L	G	G	S	S	S	L	N	Y	F	T	W	V	P	G	H	K	A	T	F	D	Q	W	E	E	F	G	G	K	E	W	T	W	D	P	L	V	P	Y	L	R	K	S	A	T	Y	H	D	D	P	R	L	Y	S	P	E	L	E	K	I	G	G	G	G	P	I	P	I	S	H	A	E	L	I	D
Template Known Secondary structure				B		S	T	T	G	G	G	G	T	S														T	T						G	G	G	S										T	T						T	T			S		G	G	G	G	G	G			S		S										G
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.																																							.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.			.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.											.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.											.	.
Query Sequence		D	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	L	M	I	F	Q	Q	.	A	V	E	D	L	I	V	E	N	D	.	.	R	V	V	G	A
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.											.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.											.	.
Template Conservation
Template Sequence		E	M	A	P	F	R	E	N	L	T	K	A	W	K	S	M	G	Q	P	L	I	E	N	I	Y	D	G	E	M	D	G	L	T	H	C	C	D	T	I	Y	R	G	Q	R	S	G	S	F	L	F	V	K	N	K	P	N	I	T	I	V	P	E	V	H	S	K	R	L	I	I	N	E	A	D	R	T	C	K	G	V
Template Known Secondary structure		G	G													T	T	T			B		S			S	S	S											S			T	T					G	G	G	G	S	S	S		T	T						S										T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		139	140	.	.	.	.						.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure								.	.	.	.	.
Query SS confidence								.	.	.	.	.
Query Sequence		V	T	Q	M	G	L	.	.	.	.	.	K	F	R	A	K	A	V	V	L	T	V	G	T	F	L	D	G	K	I
Query Conservation								.	.	.	.	.
Alig confidence								.	.	.	.	.
Template Conservation
Template Sequence		T	V	V	T	A	A	G	N	E	L	N	F	F	A	D	R	E	V	I	L	S	Q	G	V	F	E	T	P	K	L
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions