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Job DescriptionP0A6U3
Confidence99.51%DateThu Jan 5 11:03:55 GMT 2012
Rank69Aligned Residues315
% Identity19%Templatec3ka7A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   910.........20.........30.........40.........50... ......60.........70.........80......
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Query Sequence  VIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGG. . IGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA
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Template Sequence  TVVIGAGLGGLLSAARLSKAGHEVEVFERL. PITGGRFTNLSYKGFQLSSGAFHXLPNGPGGPLACFLKEVEASVNIVRS
Template Known Secondary structure 

BTT

SS.SSSBTTSSTTSSS
S
BTTGGGSTT




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   3......10.........20.........30.. .......40.........50.........60.........70.........80.
 
   87..90.........100...
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Query Sequence  SKGPAVRATRAQADRVL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  EXTTVRVPLKKGNPDYVKGFKDISFNDFPSLLSYKDRXKIALLIVSTRKNRPSGSSLQAWIKSQVSDEWLIKFADSFCGW
Template Known Secondary structure 


SSTT

SSTT
GGGGGGGS
TTTS


SSB


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   82.......90.........100.........110.........120.........130.........140.........150.........160.
 
   104.....110.........120.........130.........140.......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . YRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFR
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Template Sequence  ALSLKSDEVPVEEVFEIIENXYRFGGTGIPEGGCKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGI. IADDRIHD
Template Known Secondary structure  SS
GGGSB
S
TTSTT

S

TT.TT
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   162.......170.........180.........190.........200.........210.........220.........230.. .......240
 
   148.150.........160.........170.........180.........190.........200.........210.........220.......
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Query Sequence  AKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGDNPMPVF
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Template Sequence  ADLVISNLG. . . . . . . . . . . . . . . . . . . . HAATAVLCSEALSKEADAAYFKXVGTLQPSAGIKICLAADEPLVGHTGVLL
Template Known Secondary structure 
S
S
....................TTTT

TTTT


BSS
SS
SSS
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   241........ 250.........260.........270.........280.........290.........300
 
   228.230.........240.........250.........260.........270.........280.........290.........300.......
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Query Sequence  SFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEGLTSNEI
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Template Sequence  TPYTRRINGVNEVTQADPELAPPGKHLTXCHQYVAPENVKNLESEI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 

SSSS
GGGT
GGGS
TT

GGGGGG..................................
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   301........310.........320.........330.........340......
 
   308.310.........320.........330.........340......... 350.........360.........370 ...... ...380....
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Query Sequence  YPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFD. PRDLKPTLESKFIQGLFFAGQ. INGTTG. YEEAAAQG
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Template Sequence  . . . . . . . . . . EXGLEDLKEIFPGKRYEVLLIQSYHDEWPVNRAASGTDPGNET. PFSGLYVVGDGAKGKGGIEVEGVALG
Template Known Secondary structure  ..........STT

BTTB
SBSS
TT



SB
.SSBT
STTS

TT

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   347..350.........360.........370.........380......... 390.........400.........410.....
 
   385....390
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Query Sequence  LLAGLN
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Template Sequence  VXSVXE
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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