Job Description P0A6U3 Confidence 100.00% Date Thu Jan 5 11:03:55 GMT 2012 Rank 5 Aligned Residues 396 % Identity 28% Template c3g5rA_ PDB info PDB header:transferase Chain: A: PDB Molecule:methylenetetrahydrofolate--trna-(uracil-5-)- PDBTitle: crystal structure of thermus thermophilus trmfo in complex with2 tetrahydrofolate Resolution 1.60 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.										.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	M	G	Q	Q	T	L	L	L	T	.	.	.	.	.	.	.	.	.	H	N	I	D	T	L	G	Q	M	S	C	N	P	A	I	G	G	I	G	.	.	.	.	K	G	H	L	V	K	E	V	D	A	L	G	G	L	M	A	K	A	I
Query Conservation																															.	.	.	.	.	.	.	.	.																				.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		R	V	N	V	V	G	A	G	L	A	G	S	E	A	A	W	T	L	L	R	L	G	V	P	V	R	L	F	E	M	R	P	K	R	M	T	P	A	H	G	T	D	R	F	A	E	I	V	C	S	N	S	L	G	G	E	G	E	T	N	A	K	G	L	L	Q	A	E	M	R	R	A	G	S	L	V	M	E	A	A
Template Known Secondary structure		S							S													T	T									T	T	T	S			S	S			S	S		T	T				S								S	T	T													T	T
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	A	G	I	Q	F	R	I	L	N	A	S	K	G	P	A	V	R	A	T	R	A	Q	A	D	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	P	N	L	M	I	F	Q	Q	A	V	E	D	L	I	V	E	N	D	R	V	V	G	A	V	T	Q	M	G	L	K	F	R	A	K	A	V	V	L	T
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.									.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.									.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	L	A	.	.	.	.	.	.	.	.	.	.	R	V	P	A	G	G	A	L	.	.	A	V	D	R	E	E	F	S	G	Y	I	T	E	R	L	T	G	H	P	L	L	E	V	V	R	E	E	V	R	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	G	I	T	V	L	A
Template Known Secondary structure				T	.	.	.	.	.	.	.	.	.	.					S	S			.	.																	T		T	T						S				S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.									.	.																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.											.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.																			.	.	.	.	.	130	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																					.
Query SS confidence																																					.
Query Sequence		V	G	T	F	L	D	G	K	I	H	I	G	L	D	N	Y	S	G	G	R	A	G	D	P	P	S	I	P	L	S	R	R	L	R	E	.	L	P	L	R	V	G	R	L	K	T	G	T	P	P	R	I	D	A	R	T	I	D	F	S	V	L	A	Q	Q	H	G	D	N	P	M	P	V	F	S	F	M	G	N	A
Query Conservation																																					.
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	G	P	L	T	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	A	E	A	L	K	R	R	F	G	D	H	F	L	A	Y	Y	D	A	A	S	P	I	V	L	Y	E	S	I	D	L	T	K	C	F	R	A	G	R	Y	G	Q	S	A	D	Y	L	N	C	P	M	T
Template Known Secondary structure				T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												G	G	G													G	G	G	S		G	G	G							T	T	S		T	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		133	.	.	.	.	.	.																					140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.				.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																									.	.	.
Query SS confidence																									.	.	.
Query Sequence		S	Q	H	P	Q	Q	V	P	C	Y	I	T	H	T	N	E	K	T	H	D	V	I	R	.	.	.	S	N	L	D	R	S	P	M	Y	A	G	V	I	E	G	V	G	P	R	Y	C	P	S	I	E	D	K	V	M	R	F	A	D	R	N	Q	H	Q	I	F	L	E	P	E	G	L	T	S	N	E	I	Y	P	N
Query Conservation																									.	.	.
Alig confidence																									.	.	.											.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.																	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	E	E	Y	R	R	F	H	Q	A	L	L	E	A	C	V	P	V	E	E	L	A	R	R	G	Y	Q	T	L	L	F	G	P	M	K	P	.	.	V	G	L	V	D	P	R	T	G	K	E	P	F	A	V	V	.	.	.	.	.	.	.	.	.	.	.	Q	L	R	Q	E	D	K	A	G	R	M	W	S	L	V
Template Known Secondary structure																											T	T					T	T	T			.	.	T	T			B	T	T	T	T	B			S				.	.	.	.	.	.	.	.	.	.	.						S	T	T	S						T
Template Predicted Secondary structure																																						.	.																	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.												.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		G	I	S	T	S	L	P	F	D	V	Q	M	Q	I	V	R	S	M	Q	G	M	E	N	A	K	I	V	R	P	G	Y	A	I	E	Y	D	F	F	D	.	P	R	D	L	K	P	T	L	E	S	K	F	I	Q	G	L	F	F	A	G	Q	I	N	G	T	T	G	Y	E	E	A	A	A	Q	G	L	L	A	G	L
Query Conservation																																									.
Alig confidence																																									.
Template Conservation
Template Sequence		G	F	Q	T	G	L	K	W	P	E	Q	K	R	L	I	Q	M	I	P	G	L	E	N	A	E	I	V	R	Y	G	V	M	H	R	N	T	Y	L	N	A	P	R	L	L	G	E	T	L	E	F	R	E	A	E	G	L	Y	A	A	G	V	L	A	G	V	E	G	Y	L	E	S	A	A	T	G	F	L	A	G	L
Template Known Secondary structure		T															T	T	S	T	T		T	T																					B		T	T	S	B	B	T	T	S	T	T					G	G	G	G	T	B		S
Template Predicted Secondary structure
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	A	R	L	S	A	D	K	E	G	W	A	P	A	R	S	Q	A	Y	L	G	V	L	V	D	D	L	C	T	L	G	T	K	E	P	Y	R	M	F	T	S	R	A	E	Y	R	L	M	L	R	E	D	N	A	D	L	R	L	T	E	I	G	R	E	L	G	L	V	D	D	E	R	W	A	R	F	N	E	K
Query Conservation
Alig confidence																.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	A	A	R	K	A	L	G	L	P	P	V	A	P	.	P	E	E	S	M	L	G	G	L	V	R	Y	L	A	T	A	N	P	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Q	P	M	Y	A	N	W	G	L	V	P	P	V	E	G	R	M	G	K	K	E	K	R	Q	A	M	Y	R	R	G
Template Known Secondary structure									T							.		T	T	S												S			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.				B				G	G	G	S					S	S
Template Predicted Secondary structure																.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.		370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.															390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
		470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	N	I	E	R	E	R	Q	R	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	E	A	F	S	A	W	L	S	G	L	N
Template Known Secondary structure													S
Template Predicted Secondary structure
Template SS confidence
		421	.	.	.	.	.	.	.	.	430	.	.