Job Description P0A6U3 Confidence 100.00% Date Thu Jan 5 11:03:55 GMT 2012 Rank 3 Aligned Residues 521 % Identity 100% Template c3g05B_ PDB info PDB header:rna binding protein Chain: B: PDB Molecule:trna uridine 5-carboxymethylaminomethyl modification enzyme PDBTitle: crystal structure of n-terminal domain (2-550) of e.coli mnmg Resolution 3.49 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	Y	P	D	P	F	D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	M	G	Q	Q	T	L	L	L	T	H	N	I	D	T	L	G	Q	M	S	C	N	P	A	I	G	G	I	G	K	G	H	L	V	K	E	V	D	A	L	G	G	L	M	A	K	A	I	D	Q	A	G	I	Q	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	Y	P	D	P	F	D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	M	G	Q	Q	T	L	L	L	T	H	N	I	D	T	L	G	Q	M	S	C	N	P	A	I	G	G	I	G	K	G	H	L	V	K	E	V	D	A	L	G	G	L	M	A	K	A	I	D	Q	A	G	I	Q	F
Template Known Secondary structure				S	S								S		S														T								S		T	T	T	T	T				S	S	S				S	T	T											T	T		S							T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	L	N	A	S	K	G	P	A	V	R	A	T	R	A	Q	A	D	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	P	N	L	M	I	F	Q	Q	A	V	E	D	L	I	V	E	N	D	R	V	V	G	A	V	T	Q	M	G	L	K	F	R	A	K	A	V	V	L	T	V	G	T	F	L	D	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	I	L	N	A	S	K	G	P	A	V	R	A	T	R	A	Q	A	D	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	P	N	L	M	I	F	Q	Q	A	V	E	D	L	I	V	E	N	D	R	V	V	G	A	V	T	Q	M	G	L	K	F	R	A	K	A	V	V	L	T	V	G	T	F	L	D	G
Template Known Secondary structure					S	T	T	S		G	G	G							B														T	T		T	T														S	S	S	B							T	T	S														S				S
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	I	H	I	G	L	D	N	Y	S	G	G	R	A	G	D	P	P	S	I	P	L	S	R	R	L	R	E	L	P	L	R	V	G	R	L	K	T	G	T	P	P	R	I	D	A	R	T	I	D	F	S	V	L	A	Q	Q	H	G	D	N	P	M	P	V	F	S	F	M	G	N	A	S	Q	H	P	Q	Q	V	P
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	I	H	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	S	I	P	L	S	R	R	L	R	E	L	P	L	R	V	G	R	L	K	T	G	T	P	P	R	I	D	A	R	T	I	D	F	S	V	L	A	Q	Q	H	G	D	N	P	M	P	V	F	S	F	M	G	N	A	S	Q	H	P	Q	Q	V	P
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.											S	S																G	G	G	S			S	S	S	B						S	S				S	S	S	S			S	T	T
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162	.	.	.	.														.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	Y	I	T	H	T	N	E	K	T	H	D	V	I	R	S	N	L	D	R	S	P	M	Y	A	G	V	I	E	G	V	G	P	R	Y	C	P	S	I	E	D	K	V	M	R	F	A	D	R	N	Q	H	Q	I	F	L	E	P	E	G	L	T	S	N	E	I	Y	P	N	G	I	S	T	S	L	P	F	D	V	Q
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	Y	I	T	H	T	N	E	K	T	H	D	V	I	R	S	N	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	S	P	S	I	E	D	K	V	M	R	F	A	D	R	N	Q	H	Q	I	F	L	E	P	E	G	L	T	S	N	E	I	Y	P	N	G	I	S	T	S	L	P	F	D	V	Q
Template Known Secondary structure																			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S	T	T	T	S	S		T	T	S									S		T	T								S					S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260																.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	Q	I	V	R	S	M	Q	G	M	E	N	A	K	I	V	R	P	G	Y	A	I	E	Y	D	F	F	D	P	R	D	L	K	P	T	L	E	S	K	F	I	Q	G	L	F	F	A	G	Q	I	N	G	T	T	G	Y	E	E	A	A	A	Q	G	L	L	A	G	L	N	A	A	R	L	S	A	D	K	E	G	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q	I	V	R	S	M	Q	G	M	E	N	A	K	I	V	R	P	G	Y	A	I	E	Y	D	F	F	D	P	R	D	L	K	P	T	L	E	S	K	F	I	Q	G	L	F	F	A	G	Q	I	N	G	T	T	G	Y	E	E	A	A	A	Q	G	L	L	A	G	L	N	A	A	R	L	S	D	D	K	E	G	W
Template Known Secondary structure								S	T	T		T	T																	G	G	G	B		T	T			B	S	S	S	B	T					S	T	T	T	T																						T	T	T
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	A	R	S	Q	A	Y	L	G	V	L	V	D	D	L	C	T	L	G	T	K	E	P	Y	R	M	F	T	S	R	A	E	Y	R	L	M	L	R	E	D	N	A	D	L	R	L	T	E	I	G	R	E	L	G	L	V	D	D	E	R	W	A	R	F	N	E	K	L	E	N	I	E	R	E	R	Q	R	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	P	A	R	S	Q	A	Y	L	G	V	L	V	D	D	L	C	T	L	G	T	K	E	P	Y	R	M	F	T	S	R	A	E	Y	R	L	M	L	R	E	D	N	A	D	L	R	L	T	E	I	G	R	E	L	G	L	V	D	D	E	R	W	A	R	F	N	E	K	L	E	N	I	E	R	E	R	Q	R	L	K
Template Known Secondary structure					T	T	T													T	S	S								T	T	T						S			G	G	G													T																							T	T	T
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	W	V	T	P	S	A	E	A	A	A	E	V	N	A	H	L	T	A	P	L	S	R	E	A	S	G	E	D	L	L	R	R	P	E	M	T	Y	E	K	L	T	T	L	T	P	F	A	P	A	L	T	D	E	Q	A	A	E	Q	V	E	I	Q	V	K	Y	E	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	T	W	V	T	P	S	A	E	A	A	A	E	V	N	A	H	L	T	A	P	L	S	R	E	A	S	G	E	D	L	L	R	R	P	E	M	T	Y	E	K	L	T	T	L	T	P	F	A	P	A	L	T	D	E	Q	A	A	E	Q	V	E	I	Q	V	K	Y	E	G
Template Known Secondary structure		S					T	T	S	T	T					T	T	T	S	S	S				S									S	S	T	T									S	T	T	S					S														T
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550