Job Description P0A6U3 Confidence 100.00% Date Thu Jan 5 11:03:55 GMT 2012 Rank 1 Aligned Residues 605 % Identity 48% Template c3cp8C_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:trna uridine 5-carboxymethylaminomethyl PDBTitle: crystal structure of gida from chlorobium tepidum Resolution 3.20 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	P	F	D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	M	G	Q	Q	T	L	L	L	T	H	N	I	D	T	L	G	Q	M	S	C	N	P	A	I	G	G	I	G	K	G	H	L	V	K	E	V	D	A	L	G	G	L	M	A	K	A	I	D	Q	A	G	I	Q	F	R	I	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		H	M	Y	D	V	I	V	V	G	A	G	H	A	G	C	E	A	A	L	A	V	A	R	G	G	L	H	C	L	L	I	T	S	D	L	S	A	V	A	R	M	S	C	N	P	A	I	G	G	V	A	K	G	Q	I	T	R	E	I	D	A	L	G	G	E	M	G	K	A	I	D	A	T	G	I	Q	F	R	M	L
Template Known Secondary structure												S													T	T								S		G	G	G	T	T			S	S		S					T	T												T		S
Template Predicted Secondary structure
Template SS confidence
		0	.	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	S	K	G	P	A	V	R	A	T	R	A	Q	A	D	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	P	N	L	M	I	F	Q	Q	A	V	E	D	L	I	V	E	N	D	R	V	V	G	A	V	T	Q	M	G	L	K	F	R	A	K	A	V	V	L	T	V	G	T	F	L	D	G	K	I	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	R	S	K	G	P	A	M	H	S	P	R	A	Q	A	D	K	T	Q	Y	S	L	Y	M	R	R	I	V	E	H	E	P	N	I	D	L	L	Q	D	T	V	I	G	V	S	A	N	S	G	K	F	S	S	V	T	V	R	S	G	R	A	I	Q	A	K	A	A	I	L	A	C	G	T	F	L	N	G	L	I	H
Template Known Secondary structure			S	S	S		T	T	T																						T		T	T															T	T								T	T	S													T	T		B	T
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		I	G	L	D	N	Y	S	G	G	R	.	A	G	D	P	P	S	I	P	L	S	R	R	L	R	E	L	P	L	R	V	G	R	L	K	T	G	T	P	P	R	I	D	A	R	T	I	D	F	S	V	L	A	Q	Q	H	G	D	N	P	M	P	V	F	S	F	M	G	N	A	S	Q	H	P	Q	Q	V	P	C	Y
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		I	G	M	D	H	F	P	G	G	R	S	T	A	E	P	P	V	E	G	L	T	E	S	L	A	S	L	G	F	S	F	G	R	L	K	T	G	T	P	P	R	I	D	S	R	S	V	D	Y	T	I	V	T	E	Q	P	G	D	V	D	P	V	P	F	S	F	S	S	T	S	V	A	N	R	N	L	V	S	C	Y
Template Known Secondary structure			T	T						S	S	S	T	T	S			B		S								T	T																G	G	G	S		T	T	T	S							S	S				S	S	S	S					G	G	G
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	H	T	N	E	K	T	H	D	V	I	R	S	N	L	D	R	S	P	M	Y	A	G	V	I	E	G	V	G	P	R	Y	C	P	S	I	E	D	K	V	M	R	F	A	D	R	N	Q	H	Q	I	F	L	E	P	E	G	L	T	S	N	E	I	Y	P	N	G	I	S	T	S	L	P	F	D	V	Q	M	Q
Query Conservation
Alig confidence																										.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.	.	.	.	.	.	.
Template Sequence		L	T	K	T	T	E	K	T	H	D	I	L	R	T	G	F	D	R	S	P	L	F	T	G	.	.	.	.	.	.	.	.	.	C	P	S	I	E	D	K	I	S	R	F	P	D	K	S	S	H	H	I	F	L	E	P	E	G	T	D	T	V	E	M	Y	V	N	G	F	S	T	S	L	P	E	D	I	Q	I	A
Template Known Secondary structure															T	T	T	T	T		T	T				.	.	.	.	.	.	.	.	.				S									S		S									S	S	T	T								T					S
Template Predicted Secondary structure																										.	.	.	.	.	.	.	.	.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.										.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	R	S	M	Q	G	M	E	N	A	K	I	V	R	P	G	Y	A	I	E	Y	D	F	F	D	P	R	D	L	K	P	T	L	E	S	K	F	I	Q	G	L	F	F	A	G	Q	I	N	G	T	T	G	Y	E	E	A	A	A	Q	G	L	L	A	G	L	N	A	A	R	L	S	A	D	K	E	G	W	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	R	S	I	P	G	L	E	E	A	K	M	I	R	P	G	Y	A	I	E	Y	D	F	F	H	P	W	Q	I	R	S	T	M	E	T	R	P	V	E	N	L	F	F	A	G	Q	I	N	G	T	S	G	Y	E	E	A	A	A	Q	G	L	M	A	G	I	N	A	V	R	K	I	L	G	K	E	L	I	V	L
Template Known Secondary structure				T	T	S	T	T		T	T																	G	G	G	B		T	T	S	B	B	S	S	S	B	T					S	G	G	G	T	B																							T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	S	Q	A	Y	L	G	V	L	V	D	D	L	C	T	L	G	T	K	E	P	Y	R	M	F	T	S	R	A	E	Y	R	L	M	L	R	E	D	N	A	D	L	R	L	T	E	I	G	R	E	L	G	L	V	D	D	E	R	W	A	R	F	N	E	K	L	E	N	I	E	R	E	R	Q	R	L	K	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	D	Q	A	Y	I	G	V	L	I	D	D	L	I	T	K	E	T	K	E	P	Y	R	M	F	T	S	S	A	E	H	R	L	I	L	R	H	D	N	A	D	L	R	L	R	K	I	G	Y	D	C	N	L	V	S	S	D	D	L	H	R	T	E	S	I	I	K	R	V	Q	H	C	L	E	V	M	K	T	A
Template Known Secondary structure			T	T	T																S	S		B		T	T	T				S			G	G	G		G	G	G												T	T		S
Template Predicted Secondary structure
Template SS confidence
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.						.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		W	V	T	P	S	A	E	A	A	A	E	V	N	A	H	L	T	A	P	L	S	R	E	A	S	G	E	D	L	L	R	R	P	E	M	T	Y	E	K	L	T	T	L	T	P	F	A	P	A	L	T	.	.	.	.	.	D	E	Q	A	A	E	Q	V	E	I	Q	V	K	Y	E	G	Y	I	A	R	Q	Q	D	E
Query Conservation																																																					.	.	.	.	.
Alig confidence									.																																												.	.	.	.	.
Template Conservation									.
Template Sequence		K	V	T	P	A	E	I	.	N	T	L	L	M	N	K	G	L	Q	E	L	K	T	P	A	R	A	L	S	L	I	K	R	P	G	I	S	L	Q	D	I	L	E	H	S	L	S	V	R	S	A	A	E	E	L	C	N	D	P	R	V	A	E	Q	V	Q	I	E	I	K	Y	E	G	Y	I	K	R	E	Q	L	V
Template Known Secondary structure									.								T						S									S	S	S	S								T	T																											T
Template Predicted Secondary structure									.
Template SS confidence
		480	.	.	.	.	.	.		.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	K	Q	L	R	N	E	N	T	L	L	P	A	T	L	D	Y	R	Q	V	S	G	L	S	N	E	V	I	A	K	L	N	D	H	K	P	A	S	I	G	Q	A	S	R	I	S	G	V	T	P	A	A	I	S	I	L	L	V	W	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	D	R	I	A	R	L	D	S	L	H	I	P	D	N	F	N	Y	D	S	L	N	S	L	S	S	E	G	R	E	K	L	L	K	H	R	P	A	T	I	G	Q	A	S	R	I	L	G	V	S	P	S	D	V	S	I	L	M	I	R	L
Template Known Secondary structure																S	S		S	T	T	S	S	S			T												S	S					T	T	S	T	T	S										T	T
Template Predicted Secondary structure
Template SS confidence
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.