Job Description P0A6U3 Confidence 99.93% Date Thu Jan 5 11:03:55 GMT 2012 Rank 16 Aligned Residues 365 % Identity 15% Template c2gqfA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0933; PDBTitle: crystal structure of flavoprotein hi0933 from haemophilus influenzae2 rd Resolution 2.70 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.										.	.	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Query Sequence		Y	P	D	P	F	D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	M	G	Q	Q	T	L	L	L	T	H	N	I	D	T	L	G	.	.	.	.	.	.	Q	M	S	C	N	P	A	I	G	G	I	G	K	G	H	L	V	K	E	.	.	.	.	.	.	.	.	.	V	D	A	L	G
Query Conservation																																											.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Alig confidence																																											.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	S	Q	Y	S	E	N	I	I	I	G	A	G	A	A	G	L	F	C	A	A	Q	L	A	K	L	G	K	S	V	T	V	F	D	N	G	K	K	I	G	R	K	I	L	X	S	G	G	G	F	C	N	F	T	N	L	E	V	T	P	A	H	Y	L	S	Q	N	P	H	F	V	K	S	A	L	A	R	Y	T	N
Template Known Secondary structure							S							S													T	T								S	S	S	S	S							G	G	G	G	T						S	S			G	G	G				S		T	T	S	T							S
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.			.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																																																					.	.
Query SS confidence																																																																					.	.
Query Sequence		G	L	M	A	K	A	I	D	Q	A	G	I	Q	F	R	I	L	N	A	S	K	G	P	A	V	R	A	T	R	A	Q	A	D	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	P	N	L	M	I	F	Q	Q	A	V	E	D	L	I	V	E	N	D	R	.	.	V	V	G	A	V	T	Q	M	G	L	K
Query Conservation																																																																					.	.
Alig confidence																												.	.	.	.	.	.																																				.	.
Template Conservation																												.	.	.	.	.	.
Template Sequence		W	D	F	I	S	L	V	A	E	Q	G	I	T	Y	H	E	K	E	L	G	Q	L	F	C	D	E	.	.	.	.	.	.	G	A	E	Q	I	V	E	X	L	K	S	E	C	D	K	Y	G	A	K	I	L	L	R	S	E	V	S	Q	V	E	R	I	Q	N	D	E	K	V	R	F	V	L	Q	V	N	S	T	Q
Template Known Secondary structure											T	T							S	T	T					T	T	.	.	.	.	.	.		T															T						S											S		S	S								T	T
Template Predicted Secondary structure																												.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.							.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190			.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure																																															.	.
Query SS confidence																																															.	.
Query Sequence		F	R	A	K	A	V	V	L	T	V	G	T	F	L	D	G	K	I	H	I	G	L	D	N	Y	S	G	G	R	A	G	D	P	P	S	I	P	L	S	R	R	L	R	E	L	.	.	P	L	R	V	G	R	L	K	T	G	T	P	P	R	I	D	A	R	T	I	D	F	S	V	L	A	Q	Q	H	G	D	N	P
Query Conservation																																															.	.
Alig confidence																																															.	.																											.	.	.	.
Template Conservation																																																																											.	.	.	.
Template Sequence		W	Q	C	K	N	L	I	V	A	T	G	G	L	S	X	P	G	L	G	A	T	P	F	G	Y	Q	I	A	E	Q	F	G	I	P	V	I	P	P	R	A	S	L	V	P	F	T	Y	R	E	T	D	K	F	L	T	A	L	S	G	I	S	L	P	V	T	I	T	A	L	C	G	K	S	.	.	.	.	F	Y	N
Template Known Secondary structure					S									S	S		G	G	G	T			S									T	T										S							G	G	G	G	G	G	G	G	G	T	T										T	T	S			.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.
Template SS confidence
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	P	V	F	S	F	M	G	N	A	S	Q	H	P	Q	Q	V	P	C	Y	I	T	H	T	N	E	K	T	H	D	V	I	R	S	N	L	D	R	S	P	M	Y	A	G	V	I	E	G	V	G	P	R	Y	C	P	S	I	E	D	K	V	M	R	F	A	D	R	N	Q	H	Q	I	F	L	E	P	E	G	L	T
Query Conservation
Alig confidence																														.	.	.	.	.
Template Conservation																														.	.	.	.	.
Template Sequence		Q	L	L	F	T	H	R	G	I	S	G	P	A	V	L	Q	I	S	N	Y	W	Q	P	T	E	S	V	E	.	.	.	.	.	I	D	L	L	P	N	H	N	V	E	E	E	I	N	Q	A	K	Q	S	S	P	K	Q	X	L	K	T	I	L	V	R	L	L	P	K	K	L	V	E	L	W	I	E	Q	G	I	V
Template Known Secondary structure							S	S				S							T	T	T			T	T					.	.	.	.	.			S		S	S	S														T	T	S	B						T	T	T	S											T	T	S	S
Template Predicted Secondary structure																														.	.	.	.	.
Template SS confidence
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.						.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.											.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.
Query Sequence		S	N	E	I	Y	P	N	G	I	S	T	S	L	P	F	D	V	Q	M	Q	I	V	R	.	.	.	.	.	.	.	.	.	.	S	M	Q	G	M	E	N	A	K	I	V	R	P	G	Y	A	I	E	Y	D	F	F	D	P	R	D	L	K	P	T	L	E	S	K	F	I	Q	G	L	F	F	A	G	Q	I	N	G
Query Conservation																									.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.															.	.										.	.	.	.
Template Conservation		.	.	.	.	.																																											.	.										.	.	.	.
Template Sequence		.	.	.	.	.	Q	D	E	V	I	A	N	I	S	K	V	R	V	K	N	L	V	D	F	I	H	H	W	E	F	T	P	N	G	T	E	G	Y	R	T	A	E	V	T	X	G	G	.	.	V	D	T	K	V	I	S	S	K	.	.	.	.	T	X	E	S	N	Q	V	S	G	L	Y	F	I	G	E	V	L	D
Template Known Secondary structure		.	.	.	.	.				B	G	G	G																					S					T	T	T		S						.	.			G	G	G	B		T	T	.	.	.	.	T		B	B	S	S	S	T	T					G	G	G	B	S
Template Predicted Secondary structure		.	.	.	.	.																																											.	.										.	.	.	.
Template SS confidence
							306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.					.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		374	.	.							.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure					.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.
Query Sequence		T	T	G	.	.	.	.	.	.	Y	E	E	A	A	A	Q	G	L	L	A	G	L	N	A	A	R
Query Conservation					.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.
Template Conservation
Template Sequence		V	T	G	W	L	G	G	Y	N	F	Q	W	A	W	S	S	A	Y	A	C	A	L	S	I	S	R
Template Known Secondary structure						T	T	T																			T
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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