Job Description P0A6U3 Confidence 99.79% Date Thu Jan 5 11:03:55 GMT 2012 Rank 27 Aligned Residues 310 % Identity 17% Template c1x31A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:sarcosine oxidase alpha subunit; PDBTitle: crystal structure of heterotetrameric sarcosine oxidase from2 corynebacterium sp. u-96 Resolution 2.15 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	M	G	Q	Q	T	L	L	L	T	H	N	I	D	T	L	G	Q	M	S	C	N	P	A	I	G	G	I	G	K	G	H	L	V	K	E	V	D	A	L	G	G	L	M	A	K	A	I	D	Q	A	G	I	Q	F	R	I	L	N	A
Query Conservation
Alig confidence																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	D	V	L	V	V	G	A	G	P	A	G	L	A	A	A	R	E	A	S	R	S	G	A	R	V	M	L	L	D	E	R	P	E	A	G	G	T	L	R	E	A	S	G	E	Q	I	D	G	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S													T	T								S	S	S	S	S		G	G	G	G	G			S				T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	K	G	P	A	V	R	A	T	R	A	Q	A	D	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	P	N	L	M	I	F	Q	Q	A	V	E	D	L	I	V	E	N	D	R	V	V	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	Q	M	G	L	K	F	R	A	K	A	V
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	A	Q	W	I	D	A	V	T	E	E	L	A	A	A	E	E	T	T	H	L	Q	R	T	T	V	F	G	S	Y	D	A	N	Y	I	L	A	A	Q	R	R	T	V	H	L	D	G	P	S	G	Q	G	V	S	R	E	R	I	W	H	I	R	A	K	Q	V
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																	T	T					S	S								T	T	T									S	T	T		S	S				T	T			S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
															178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	T	V	G	T	F	L	D	G	K	I	H	I	G	L	D	N	Y	S	G	G	R	A	G	D	P	P	S	I	P	L	S	R	R	L	R	E	L	P	L	R	V	G	R	L	K	T	G	T	P	P	R	I	D	A	R	T	I	D	F	S	V	L	A	Q	Q	H	G	D	N	P	M	P	V	F	S	F	M	G
Query Conservation
Alig confidence																							.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	L	A	T	A	A	H	E	R	P	I	V	F	E	N	N	D	R	P	G	I	.	.	.	.	.	M	L	A	G	S	V	R	S	Y	L	N	R	F	G	V	R	A	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	I	A	V	A	T	T	N	D	S	V	Y	P	L	V	S	E	L	A
Template Known Secondary structure															B	T	T	T	S	T	T		.	.	.	.	.																	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S						S	S	G	G	G								G
Template Predicted Secondary structure																							.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.						.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.																	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	S	Q	H	P	Q	Q	V	P	C	Y	I	T	H	T	N	E	K	T	H	D	V	I	R	S	N	L	D	R	S	P	M	Y	A	G	V	I	E	G	V	G	P	R	Y	C	P	S	I	E	D	K	V	M	R	F	A	D	R	N	Q	H	Q	I	F	L	E	P	E	G	L	T	S	N	E	I	Y	P	N	G
Query Conservation
Alig confidence																																																																									.	.	.	.
Template Conservation																																																																									.	.	.	.
Template Sequence		A	S	G	G	V	V	A	V	I	D	A	R	Q	N	I	S	A	A	A	A	Q	A	V	T	D	G	V	T	V	L	T	G	S	V	V	A	N	T	E	A	D	A	S	G	E	L	S	A	V	L	V	A	T	L	D	E	Q	R	N	L	G	E	A	Q	R	F	E	A	D	V	L	.	.	.	.	A	V	S	G	G
Template Known Secondary structure		G	G	T			S						S	S	S											T	T					T	T										T	T	S	S									B		T	T			B									S			.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.					.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S	T	S	L	P	F	D	V	Q	M	Q	I	V	R	S	M	Q	G	M	E	N	A	K	I	V	R	P	G	Y	A	I	E	Y	D	F	F	D	P	R	D	L	K	P	T	L	E	S	K	F	I	Q	G	L	F	F	A	G	Q	I	N	G	T	T	G	Y	E	E	A	A	A	Q	G	L	L	A	G	L	N	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template Sequence		F	N	P	V	V	H	L	H	S	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	K	L	N	W	D	T	S	I	H	A	.	.	.	.	F	V	P	A	D	A	V	A	N	Q	H	L	A	G	A	L	T	G	L	L	D	T	A	S	A	L	S	T	G	A	A	T	G	A	A	A
Template Known Secondary structure												T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T							T	T	T	T		.	.	.	.					S			T	T					G	G	G	G	T			S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.
Template SS confidence
		380	.	.	.	.	.	.	.	.	.	390																		.	.	.	.	.	.	.	.	.	400	.	.					.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
		392	.	.	.	.	.	.	.	400	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	L	S	A	D	K	E	G	W	A	P	A	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	A	A	G	F	E	K	I	A	E	V	P	Q
Template Known Secondary structure					T	T
Template Predicted Secondary structure
Template SS confidence
		439	440	.	.	.	.	.	.	.	.	.	450	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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