Job Description P0A6U3 Confidence 99.93% Date Thu Jan 5 11:03:55 GMT 2012 Rank 15 Aligned Residues 389 % Identity 18% Template c1qo8A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:flavocytochrome c3 fumarate reductase; PDBTitle: the structure of the open conformation of a flavocytochrome2 c3 fumarate reductase Resolution 2.15 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																														.	50	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	P	D	P	F	D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	M	G	Q	Q	T	L	L	L	T	H	N	I	D	T	L	G	Q	M	S	C	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	I	G	G
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	S	E	T	T	Q	V	L	V	V	G	A	G	S	A	G	F	N	A	S	L	A	A	K	K	A	G	A	N	V	I	L	V	D	K	A	P	F	S	G	G	N	S	M	I	S	A	G	G	M	N	A	V	G	T	K	Q	Q	T	A	H	G	V	E	D	K	V	E	W	F	I	E	D	A	M	K	G	G	R	Q
Template Known Secondary structure			S											S														T								S	S	S	S	S		T	T	G	G	G			S					S	S							T	T																T	T	T
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		I	G	K	G	H	L	V	K	E	V	D	A	L	G	G	L	M	A	K	A	I	D	Q	A	G	I	Q	F	R	I	L	N	A	S	K	G	P	A	V	R	.	.	.	.	A	T	R	A	Q	A	D	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	P	N	L	M	I	F	Q	Q	A	V	E	D	L	I
Query Conservation																																										.	.	.	.
Alig confidence																																										.	.	.	.
Template Conservation
Template Sequence		Q	N	D	I	K	L	V	T	I	L	A	E	Q	S	A	D	G	V	Q	W	L	E	S	L	G	A	N	L	D	D	L	K	R	S	G	G	A	R	V	D	R	T	H	R	P	H	G	G	K	S	S	G	P	E	I	I	D	T	L	R	K	A	A	K	E	Q	G	I	D	T	R	L	N	S	R	V	V	K	L	V
Template Known Secondary structure			S																						T	T										T	T		S	S							S	S	S	S																	T	T						S
Template Predicted Secondary structure
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.						.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.
Predicted Secondary structure																		.	.	.	.	.																																																				.
Query SS confidence																		.	.	.	.	.																																																				.
Query Sequence		V	E	N	D	R	V	V	G	A	V	T	Q	M	G	L	K	.	.	.	.	.	F	R	A	K	A	V	V	L	T	V	G	T	F	L	D	G	K	I	H	I	G	L	D	N	Y	S	G	G	R	A	G	D	P	P	S	I	P	L	S	R	R	L	R	E	L	P	L	R	V	G	R	.	L	K	T	G	T	P	P
Query Conservation																		.	.	.	.	.																																																				.
Alig confidence																		.	.	.	.	.																																																				.
Template Conservation
Template Sequence		V	N	D	D	H	S	V	V	G	A	V	V	H	G	K	H	T	G	Y	Y	M	I	G	A	K	S	V	V	L	A	T	G	G	Y	G	M	N	K	E	M	I	A	Y	Y	R	P	T	M	K	D	M	T	S	S	N	N	I	T	A	T	G	D	G	V	L	M	A	K	E	I	G	A	S	M	T	D	I	D	W	V
Template Known Secondary structure				T	T	S	B									T	T	T																		T	T										G	G	G	T	T					S		T	T		S										T	T	B				S	T	T
Template Predicted Secondary structure
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.							.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.																									.	.
Query SS confidence																														.	.	.	.	.	.																									.	.
Query Sequence		R	I	D	A	R	T	I	D	F	S	V	L	A	Q	Q	H	G	D	N	P	M	P	V	F	S	F	M	G	.	.	.	.	.	.	N	A	S	Q	H	P	Q	Q	V	P	C	Y	I	T	H	T	N	E	K	T	H	D	V	I	.	.	R	S	N	L	D	R	S	P	M	Y	A	G	V	I	E	G	V	G	P	R
Query Conservation																														.	.	.	.	.	.																									.	.
Alig confidence																														.	.	.	.	.	.																									.	.
Template Conservation
Template Sequence		Q	A	H	P	T	V	G	K	D	S	R	I	L	I	S	E	T	V	R	G	V	G	A	V	M	V	N	K	D	G	N	R	F	I	S	E	L	T	T	R	D	K	A	S	D	A	I	L	K	Q	P	G	Q	F	A	W	I	I	F	D	N	Q	L	Y	K	K	A	K	M	V	R	G	Y	D	H	L	E	M	L	Y
Template Known Secondary structure									S	S	S		S	B			T					T	T						T	T	S				S		T	T	S											T	S	G	G	G																							T	T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		Y	C	P	S	I	E	D	K	V	M	R	F	A	D	R	N	Q	H	Q	I	F	L	E	P	E	.	.	G	L	T	S	N	E	I	Y	P	N	G	I	S	T	S	L	P	F	D	V	Q	M	Q	I	V	R	S	M	Q	G	M	E	N	A	K	I	V	R	P	G	Y	A	I	E	Y	D	F	F	D	P	R	D	L
Query Conservation																											.	.
Alig confidence																											.	.																																											.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.
Template Sequence		K	G	D	T	V	E	Q	L	A	K	S	T	G	M	K	V	A	D	L	A	K	T	V	S	D	Y	N	G	Y	V	A	S	G	K	D	T	A	F	G	R	A	D	M	P	L	N	M	T	Q	S	P	Y	Y	A	V	K	V	A	P	G	I	H	H	T	M	G	G	V	A	.	.	.	.	.	I	N	T	T	A	S
Template Known Secondary structure				S	S								T	T																				S			T	T	T			S						S		S	S	S																			.	.	.	.	.	B		T	T
Template Predicted Secondary structure																																																																							.	.	.	.	.
Template SS confidence
		438	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.						.	.	.	510	.	.
		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.									.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																					.						.	.	.	.	.	.	.	.
Query SS confidence																					.						.	.	.	.	.	.	.	.
Query Sequence		K	P	T	L	E	S	K	F	I	Q	G	L	F	F	A	G	Q	I	N	.	G	T	T	G	Y	.	.	.	.	.	.	.	.	E	E	A	A	A	Q	G	L	L	A	G	L	N	A	A	R	L	S	A
Query Conservation																					.						.	.	.	.	.	.	.	.
Alig confidence																					.						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	L	D	L	Q	S	K	P	I	D	G	L	F	A	A	G	E	V	T	G	G	V	H	G	Y	N	R	L	G	G	N	A	I	A	D	T	V	V	F	G	R	I	A	G	D	N	A	A	K	H	A	L
Template Known Secondary structure				B	T	T	S										S	T	T	B		S	S	S	T	T				T	T
Template Predicted Secondary structure
Template SS confidence
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.