Return to main results Retrieve Phyre Job Id

Job DescriptionP0A6U3
Confidence99.60%DateThu Jan 5 11:03:55 GMT 2012
Rank47Aligned Residues321
% Identity16%Templatec1ojtA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:surface protein; PDBTitle: structure of dihydrolipoamide dehydrogenase
Resolution2.75 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10.........20.........30.........40.... .....50.........60.........70.........80
Predicted Secondary structure 

















...













Query SS confidence 








































. . .



































Query Sequence  PDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ. . . MSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQ
Query Conservation     








 


 






 
 





      
 ...  

 



  

 
  


 


      
   
 
Alig confidence 








































...























............
Template Conservation     








 


 

  
   
  
 



    

                            ............
Template Sequence  DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAA. . . . . . . . . . . .
Template Known Secondary structure 

STT

SSS
SSSGGG............
Template Predicted Secondary structure 
























............
Template SS confidence 















































































   120.........130.........140.........150.........160.........170.........180.......
 
   81........90.........100.........110.... .....120.........130.........140.
Predicted Secondary structure 

















...................






Query SS confidence 

































. . . . . . . . . . . . . . . . . . .


























Query Sequence  FRILNASKGPAVRATRAQADRVLYRQAVRTALEN. . . . . . . . . . . . . . . . . . . QPNLMIFQQAVEDLIVENDRVVGAVTQ
Query Conservation     

   
 

   
 
 

      
   
  ...................   
 
    
  
  
   
 

 
 
Alig confidence  .........
























...................


























Template Conservation  ......... 
                                                     
               
Template Sequence  . . . . . . . . . NGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTG
Template Known Secondary structure  .........GT








TT
TTTT
Template Predicted Secondary structure  .........































Template SS confidence 















































































   188.190.........200.........210.........220.........230.........240.........250........
 
   142.......150.........160.........170.........180.........190.........200.........210.........220.
Predicted Secondary structure 

















































Query SS confidence 















































































Query Sequence  MGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD
Query Conservation   
  
 










  
    
      
  
   
  
   
  

    





 


   


 
      

Alig confidence 


























































.....................
Template Conservation              
 
                                    
       .....................
Template Sequence  EKKIVAFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMG. . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 





SS



TT
TT




SS
S.....................
Template Predicted Secondary structure 





























.....................
Template SS confidence 















































































   259260.........270.........280.........290.........300.........310.......
 
   222.......230.........240.........250.........260.........270.........280.........290.........300.
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  NPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQIFLEPEG
Query Conservation       

          

      
   
  

   
   
   
 
   




 


 

 

  
      




Alig confidence  ...






































....................

















Template Conservation  ...                                  
   
....................
       
  
      
Template Sequence  . . . TVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRF. . . . . . . . . . . . . . . . . . . . DNIMVNTKTVAVEPKEDG
Template Known Secondary structure  ...T

SSSSSSTTS
GGG....................
S
TT
Template Predicted Secondary structure  ...













....................








Template SS confidence 















































































   318.320.........330.........340.........350...... ...360.........370....
 
   302.......310.........320.........330.........340.........350.........360.........370...... ...380
Predicted Secondary structure 






































.
Query SS confidence 










































































.



Query Sequence  LTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTG. YEEA
Query Conservation        
  
 




   
    
 




 
 
 
 

 



 


  
  




 
 


 






 
.



Alig confidence 






































..
















.















.



Template Conservation    
           
  
 

 
 
  
           ..      
 
 

    
.
 
 


 

          
Template Sequence  VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAG. . VAVTDRGFIEVDKQMRT. NVPHIYAIGDIVGQPMLAHKA
Template Known Secondary structure  SSS

SS
S




GGGTTGGGTT..



TTS




TTSB
.SSTT
GGGT
SS

Template Predicted Secondary structure 





















..











.











Template SS confidence 















































































   375....380.........390.........400.........410... ......420.........430 .........440.........450.
 
   381........390..
Predicted Secondary structure 
Query SS confidence 











Query Sequence  AAQGLLAGLNAA
Query Conservation 



 






Alig confidence 











Template Conservation     
  

  
 
Template Sequence  VHEGHVAAENCA
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 











   452.......460...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions