Job Description P0A6U3 Confidence 99.41% Date Thu Jan 5 11:03:55 GMT 2012 Rank 108 Aligned Residues 337 % Identity 15% Template c1lvlA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: the refined structure of pseudomonas putida lipoamide dehydrogenase2 complexed with nad+ at 2.45 angstroms resolution Resolution 2.45 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	P	F	D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	M	G	Q	Q	T	L	L	L	T	H	N	I	D	T	L	G	Q	M	S	C	N	P	A	I	G	G	I	G	K	G	H	L	V	K	E	V	D	A	L	G	G	L	M	A	K	A	I	D	Q	A	G	I	Q	F	R	I
Query Conservation
Alig confidence																																												.	.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		T	I	Q	T	T	L	L	I	I	G	G	G	P	G	G	Y	V	A	A	I	R	A	G	Q	L	G	I	P	T	V	L	V	E	G	Q	A	L	G	G	T	C	L	.	.	.	.	.	N	I	G	C	I	P	S	K	A	L	I	H	V	A	E	Q	F	H	Q	A	S	R	F	T	E	P	S	P	L	G	I	S	V
Template Known Secondary structure						S							S														T								S	S		T	T					.	.	.	.	.			S																				T	T	S			T	T
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.						.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	A	S	K	G	P	A	V	R	A	T	R	A	Q	A	D	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	P	N	L	M	I	F	Q	Q	A	V	E	D	L	I	V	E	N	D	R	V	V	G	A	V	T	Q	M	G	L	K	F	R	A	K	A	V	V	L	T	V	G	T	F	L	D	G	K	I
Query Conservation
Alig confidence																																		.																.	.	.	.	.	.
Template Conservation																																		.																.	.	.	.	.	.
Template Sequence		A	S	P	R	L	D	I	G	Q	S	V	A	W	K	D	G	I	V	D	R	L	T	T	G	V	A	A	L	L	K	K	H	.	G	V	K	V	V	H	G	W	A	K	V	L	D	G	K	.	.	.	.	.	.	Q	V	E	V	D	G	Q	R	I	Q	C	E	H	L	L	L	A	T	G	S	S	S	V	E	L	P
Template Known Secondary structure																																	T	.	T						S							T	T	.	.	.	.	.	.					T	T						S													B	T
Template Predicted Secondary structure																																		.																.	.	.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.							.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	I	G	L	D	N	Y	S	G	G	R	A	G	D	P	P	S	I	P	L	S	R	R	L	R	E	L	P	L	R	V	G	R	L	K	T	G	T	P	P	R	I	D	A	R	T	I	D	F	S	V	L	A	Q	Q	H	G	D	N	P	M	P	V	F	S	F	M	G	N	A	S	Q	H	P	Q	Q	V	P	C	Y
Query Conservation
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	L	P	L	G	G	P	V	I	S	S	T	E	A	L	A	P	K	A	L	P	Q	H	L	V	V	V	G	G	G	Y	I	G	L	E	L	G	I	A	Y	R	K	L	G	A	Q	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	V	E	A	R	E	R	I	L	P	T	Y	D	S	E
Template Known Secondary structure		T	B			B	T	T								T			S	S			S								S														T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	S	S	S	S	T	T	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.																		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	T	H	T	N	E	K	T	H	D	V	I	R	S	N	L	D	R	S	P	M	Y	A	G	V	I	E	G	V	G	P	R	Y	C	P	S	I	E	D	K	V	M	R	F	A	D	R	N	Q	H	Q	I	F	L	E	P	E	G	L	T	S	N	E	I	Y	P	N	G	I	S	T	S	L	P	F	D	V	Q	M	Q
Query Conservation
Alig confidence																																		.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	A	P	V	A	E	S	L	K	K	L	G	I	A	L	H	L	G	H	S	V	E	G	Y	E	N	G	C	L	L	A	.	.	.	.	.	.	N	D	G	K	G	G	Q	L	R	L	E	A	D	R	V	L	V	A	V	G	R	R	P	R	T	K	G	F	N	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure														T					T	T								T	T					.	.	.	.	.	.			S	S	S								S													S	S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.							.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		I	V	R	S	M	Q	G	M	E	N	A	K	I	V	R	P	G	Y	A	I	E	Y	D	F	F	D	P	R	D	L	K	P	T	L	E	S	K	F	I	Q	G	L	F	F	A	G	Q	I	N	G	T	T	G	.	Y	E	E	A	A	A	Q	G	L	L	A	G	L	N	A	A	R	L	S	A	D	K	E	G	W	A
Query Conservation																																																							.
Alig confidence		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.									.																	.
Template Conservation		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.									.
Template Sequence		.	.	.	.	.	.	.	L	E	C	L	D	L	K	M	N	G	A	A	I	.	.	.	.	.	.	.	.	A	I	D	E	R	C	Q	T	.	S	M	H	N	V	W	A	I	G	D	V	A	G	E	P	M	L	A	H	R	A	M	A	Q	G	E	M	V	A	E	I	I	A	G	K	A	R	R	F	E	P	A	A
Template Known Secondary structure		.	.	.	.	.	.	.	G	G	G	S						T	T			.	.	.	.	.	.	.	.				T	T		B		.	S	S	T	T					G	G	G	G		S	S																		T	T								S
Template Predicted Secondary structure		.	.	.	.	.	.	.														.	.	.	.	.	.	.	.									.
Template SS confidence
									275	.	.	.	.	280	.	.	.	.	.	.	.									.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		403	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		339	340

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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