Job Description P0A6U3 Confidence 99.40% Date Thu Jan 5 11:03:55 GMT 2012 Rank 110 Aligned Residues 321 % Identity 14% Template c1gthD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:dihydropyrimidine dehydrogenase; PDBTitle: dihydropyrimidine dehydrogenase (dpd) from pig, ternary2 complex with nadph and 5-iodouracil Resolution 2.25 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.
Query SS confidence																																	.
Query Sequence		M	F	Y	P	D	P	F	D	V	I	I	I	G	G	G	H	A	G	T	E	A	A	M	A	A	A	R	M	G	Q	Q	.	T	L	L	L	T	H	N	I	D	T	L	G	Q	M	S	C	N	P	A	I	G	G	I	G	K	G	H	L	V	K	E	V	D	A	L	G	G	L	M	A	K	A	I	D	Q	A	G	I
Query Conservation																																	.
Alig confidence																																	.																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	P	E	A	Y	S	A	K	I	A	L	L	G	A	G	P	A	S	I	S	C	A	S	F	L	A	R	L	G	Y	S	D	I	T	I	F	E	K	Q	E	Y	V	G	G	L	S	T	S	E	I	P	Q	F	R	L	P	Y	D	V	V	N	F	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S		G	G	G	G									S														T									S	S	S	S		S	T					T	S		T	T	T	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	R	I	L	N	A	S	K	G	P	A	V	R	A	T	R	A	Q	A	D	R	V	L	Y	R	Q	A	V	R	T	A	L	E	N	Q	P	N	L	M	I	F	Q	Q	A	V	E	D	L	I	V	E	N	D	R	V	V	G	A	V	T	Q	M	G	L	K	F	R	A	K	A	V	V	L	T	V	G	T	F	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	M	K	D	L	G	V	K	I	I	C	G	K	S	L	S	E	N	E	.	.	.	.	.	.	.	.	I	T	L	N	T	L	K	E	E	G	Y	K	A	A	F	I	G	I	G	L	P	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T	T						S			B	S	T	T	S	.	.	.	.	.	.	.	.	B								T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.
Template SS confidence
																																246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.									.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	K	I	H	I	G	L	D	N	Y	S	G	G	R	A	G	D	P	P	S	I	P	L	S	R	R	L	R	E	L	P	L	R	V	G	R	L	K	T	G	T	P	P	R	I	D	A	R	T	I	D	F	S	V	L	A	Q	Q	H	G	D	N	P	M	P	V	F	S	F	M	G	N	A	S	Q	H	P	Q	Q
Query Conservation
Alig confidence																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	K	T	D	D	I	F	Q	G	L	T	Q	D	Q	G	F	Y	.	T	S	K	D	F	L	P	L	V	A	K	S	S	K	A	G	M	C	A	C	H	S	P	L	P	S	I	R	G	A	V	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	A	G	D	T	A	F	D	C
Template Known Secondary structure						G	G	G	T	T			T	T	T	T			.															T	T	T		S	S									S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S
Template Predicted Secondary structure																			.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.																				.	.	340	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure																																											.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																											.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	P	C	Y	I	T	H	T	N	E	K	T	H	D	V	I	R	S	N	L	D	R	S	P	M	Y	A	G	V	I	E	G	V	G	P	R	Y	C	P	S	I	.	E	D	K	V	M	R	F	A	D	R	N	Q	H	Q	I	F	L	E	P	E	G	L	T	S	N	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																											.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																											.																										.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	T	S	A	L	R	C	G	A	R	R	V	F	L	V	F	R	K	G	F	V	N	I	R	A	V	P	E	E	V	E	L	A	K	E	E	K	C	E	F	L	P	F	L	S	P	R	K	V	I	V	K	G	G	R	I	V	A	V	Q	F	V	R	T	E	Q	D	E	T	G	K	W	N	E	D	E	D	Q	I	V
Template Known Secondary structure								T	T		S							S	S		G	G	G			S											T	T						S										S	S	S													S	S	S
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.		.	.	.	380	.	.	.	.
Predicted Secondary structure																																																																									.
Query SS confidence																																																																									.
Query Sequence		E	I	Y	P	N	G	I	S	T	S	L	P	F	D	V	Q	M	Q	I	V	R	S	M	Q	G	M	E	N	A	K	I	V	R	P	G	Y	A	I	E	Y	D	F	F	D	P	R	D	L	K	P	T	L	E	S	K	F	I	Q	G	L	F	F	A	G	Q	I	N	G	T	T	G	.	Y	E	E	A	A	A	Q	G
Query Conservation																																																																									.
Alig confidence																								.	.															.	.	.	.					.	.	.	.					.																	.
Template Conservation																								.	.															.	.	.	.					.	.	.	.					.
Template Sequence		H	L	K	A	D	V	V	I	S	A	F	G	S	V	L	R	D	P	K	V	K	E	.	.	A	L	S	P	I	K	F	N	R	W	D	L	P	E	.	.	.	.	V	D	P	E	.	.	.	.	T	M	Q	T	.	S	E	P	W	V	F	A	G	G	D	I	V	G	M	A	N	T	T	V	E	S	V	N	D	G
Template Known Secondary structure						S																		.	.	T	T	T	T	S		B		T	T	S	S	B		.	.	.	.			T	T	.	.	.	.	T		B		.	S	S	T	T					G	G	G	G	T				S
Template Predicted Secondary structure																								.	.															.	.	.	.					.	.	.	.					.
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.			450	.	.	.	.	.	.	.	.	.	460	.	.	.					.	.	.	.					.	.	470	.		.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	A	G	L	N	A	A	R	L	S	A	D	K	E	G	W	A	P	A	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	Q	A	S	W	Y	I	H	K	Y	I	Q	A	Q	Y	G	A	S	V	S	A	K
Template Known Secondary structure																T	T					S	S
Template Predicted Secondary structure
Template SS confidence
		497	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions