Job Description P40876 Confidence 96.36% Date Thu Jan 5 12:01:18 GMT 2012 Rank 23 Aligned Residues 87 % Identity 21% Template c1z9oB_ PDB info PDB header:protein binding/lipid binding protein Chain: B: PDB Molecule:vesicle-associated membrane protein-associated protein a; PDBTitle: 1.9 angstrom crystal structure of the rat vap-a msp homology domain in2 complex with the rat orp1 ffat motif Resolution 1.90 Å

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		28	.	30	.	.		.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure							.								.	.	.
Query SS confidence							.								.	.	.
Query Sequence		V	V	V	G	G	.	T	R	F	I	F	P	A	.	.	.	D	R	E	S	I	S	I	L	L	T	N	T	S	Q	E	S	W	L	I	N	S	K	I	N	R	P	T	R	W	A	G	G	E	A	S	T	V	P	A	P	L	L	A	A	P	P	L	I	L	L	K	P	G	T	T	G	T	L	R	L	L	R	T	E
Query Conservation							.								.	.	.
Alig confidence							.								.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	L	D	P	P	S	D	L	K	F	K	G	P	F	T	D	V	V	T	T	N	L	K	L	Q	N	P	S	D	R	K	V	C	F	K	V	K	T	T	A	.	.	.	.	.	.	.	.	.	.	.	.	P	R	R	Y	C	V	R	P	N	S	G	V	I	D	P	G	S	I	V	T	V	S	V	M	L	Q	P
Template Known Secondary structure		S				S	S	S						S			S	S												S	S	S									S		.	.	.	.	.	.	.	.	.	.	.	.	G	G	G					S	S						T	T
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.													.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		104	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.	.	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		S	D	I	L	P	V	D	R	E	.	T	L	F	E	L	S	I	A	S	V	P	S	G	K
Query Conservation											.
Alig confidence											.
Template Conservation
Template Sequence		F	D	Y	D	P	N	E	K	S	K	H	K	F	M	V	Q	T	I	F	A	P	P	S	D
Template Known Secondary structure						T	T	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions