Job Description P40876 Confidence 25.69% Date Thu Jan 5 12:01:18 GMT 2012 Rank 59 Aligned Residues 141 % Identity 16% Template c1l5gA_ PDB info PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha v; PDBTitle: crystal structure of the extracellular segment of integrin avb3 in2 complex with an arg-gly-asp ligand Resolution 3.20 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																			.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	S	I	L	L	T	N	T	S	Q	E	S	W	L	I	N	S	K	I	N	R	P	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	A	G	G	E	A	S	T	V	P	A	P	L	L	A	A	P	P	L	I	L	L	K	P	G	T	T	G	T	L	R	L	L	R	T	E	S
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.
Template Conservation																																																															.	.	.
Template Sequence		T	L	I	V	K	A	Q	N	Q	G	E	G	A	Y	E	A	E	L	I	V	S	I	P	L	Q	A	D	F	I	G	V	V	R	N	N	E	A	L	A	R	L	S	C	A	F	K	T	E	N	Q	T	R	Q	V	V	C	D	L	G	N	P	.	.	.	M	K	A	G	T	Q	L	L	A	G	L	R	F	S	V	H
Template Known Secondary structure											S	S		B	S	S									S	S									S		S	S	S	B										S	S	S									S	S	.	.	.	B		T	T					B
Template Predicted Secondary structure																																																															.	.	.
Template SS confidence
		626	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.				.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.														.	.	.	170	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	I	L	P	V	D	R	E	T	L	F	E	L	S	I	A	S	V	P	S	G	K	V	E	N	Q	S	V	K	V	A	M	R	S	V	F	K	L	F	W	R	P	E	G	L	P	G	D	P	L	E	A	Y	Q	Q	L	R	W	T	R	N	S	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	V	Q	L
Query Conservation																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	Q	S	E	M	D	T	S	V	K	F	D	L	Q	I	Q	S	S	N	L	F	D	K	V	S	P	V	V	S	H	K	V	D	L	A	V	L	A	A	V	E	I	R	G	V	S	S	P	D	H	V	F	L	P	I	P	N	W	E	H	K	E	N	P	E	T	E	E	D	V	G	P	V	V	Q	H	I	Y	E	L
Template Known Secondary structure				T	T			S											S		S	S	S		B																							S	S	S				T	T		S	S					S	S			S
Template Predicted Secondary structure
Template SS confidence
		703	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	P	T	P	Y	Y	I	N	L	I	Q	V	S	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	N	N	G	P	S	S	F	S	K	A	M	L	H	L
Template Known Secondary structure					S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		783	.	.	.	.	.	.	790	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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