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Job DescriptionP31442
Confidence99.95%DateThu Jan 5 11:47:33 GMT 2012
Rank5Aligned Residues373
% Identity11%Templatec2xutC_
PDB info PDB header:transport proteinChain: C: PDB Molecule:proton/peptide symporter family protein; PDBTitle: crystal structure of a proton dependent oligopeptide (pot)2 family transporter.
Resolution3.62 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  LLMLVLLVAVGQMA. QTIYIPAIADMARDL. . . . . . NVREGAVQSVMGAYLLTYGVSQLFYGPISDRV. GRRPVILVGMS
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Template Sequence  IPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSL
Template Known Secondary structure 
TS
SS

SSSTTTTTTTTSS
S
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   14.....20.........30.........40.........50.........60.........70.........80.........90...
 
   82.......90... ......100.........110.........120.........130.. .......140.........150.......
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Query Sequence  IFMLATLVAVTT. SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRH. . . ANSLLNMGILVSPLLAPLIGGLLDT
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Template Sequence  IYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK
Template Known Secondary structure  TSS
TTT
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   94.....100.........110.........120.........130.........140.........150.........160.........170...
 
   158.160.........170.........180.........190...
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Query Sequence  MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPR. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  NFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPVEGKGNIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVG
Template Known Secondary structure  TS
SSSSS





TTTGGGTTTT
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   174.....180.........190.........200.........210.........220.........230.........240.........250...
 
   194.....200.........210.........220.........230.........240.........250.........260.....
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Query Sequence  . . . . . . . . TRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGR
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Template Conservation                                                                                  
Template Sequence  AGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIP
Template Known Secondary structure  TGGGTS

S

SSSSTTTTTTTSTTTSSTTTS


SSS
TTSGGGGG
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   274.....280.........290.........300.........310.........320.........330.........340.........350...
 
   266...270.........280.........290... ......300.........310.........320......... 330........
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Query Sequence  PNKRFSTLMWQSVICCLLAGLLMWIPDW. . . . . . FGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP. FLAGTAGAL
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Template Conservation                                                      
                
   
    
 
Template Sequence  FNNFVTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSF
Template Known Secondary structure  GTTT


TTTTTTTTTTTTT



STTT

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   354.....360.........370.........380.........390.........400.........410.........420.........430...
 
   339340.........350.........360.........370.........380..
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Query Sequence  VGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLP
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Template Sequence  WTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFA
Template Known Secondary structure  GGGTTS
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   446...450.........460.........470.........480.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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