Return to main results Retrieve Phyre Job Id

Job DescriptionP37663
Confidence26.49%DateThu Jan 5 11:56:36 GMT 2012
Rank40Aligned Residues164
% Identity17%Templated1fepa_
SCOP infoTransmembrane beta-barrels Porins Ligand-gated protein channel
Resolution2.40

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5960.........70.........80.........90.........100.........110.........120.........130........
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  NDILSQRIQSSQRALGLEVNLAEETPVDVTSSMSMGWNFPLYEQVTTGPVAALHYDGTTTSMYNEFGDSTTTLTDPLWHA
Query Conservation      
                         



 

 
 
     
 
 
 
 
         
 
   
        
Alig confidence 




























































.......











Template Conservation                                 
 
                           ....... 
      
   
Template Sequence  NKIEAGYVAVGQNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETVXWTNNITYXLKSENKT. . . . . . . TGDRLSIIPEYT
Template Known Secondary structure 
SS
S
B
TTS
BTTTT.......T


SS


S
Template Predicted Secondary structure 























.......









Template SS confidence 















































































   534.....540.........550.........560.........570.........580.........590.... .....600......
 
   139140.........150.........160.........170.........180.........190.........200.........210........
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  SVSTLGWRVDSRLGDLRPWAQISYNQQFGENIWKAQSGLSRMTATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTN
Query Conservation    
 




      
 

  
   


 
                   
  

  

   
    

 
      
   
Alig confidence 









...


































































Template Conservation            ...                                     
   

   
       
   
 



  
Template Sequence  LNSTLSWQAR. . . EDLSXQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLSATWDVTKNVSLTGGVDNLFDKRL
Template Known Secondary structure  ...TT

B


SB
TTS
B

GGGG

B


SSSSTT


B
Template Predicted Secondary structure 
...




















Template SS confidence 















































































   607..610...... ...620.........630.........640.........650.........660.........670.........680...
 
   219220.. .......230..
Predicted Secondary structure 


...........................
Query SS confidence 



. . . . . . . . . . . . . . . . . . . . . . . . . . .









Query Sequence  NSDY. . . . . . . . . . . . . . . . . . . . . . . . . . . LYTMGVSARF
Query Conservation   

 ...........................  
 

   
Alig confidence 



...........................









Template Conservation                               

       
 
Template Sequence  WRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYXSVNTHF
Template Known Secondary structure 


S
SS

TTSSS


TT



B



Template Predicted Secondary structure 



























Template SS confidence 








































   684.....690.........700.........710.........720....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions