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Job DescriptionP37663
Confidence99.97%DateThu Jan 5 11:56:36 GMT 2012
Rank4Aligned Residues206
% Identity17%Templatec3qq2C_
PDB info PDB header:membrane protein/protein transportChain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  WQLSLLASVVISA. . . . FFLNTAYAWQQEYI. . . . . . . VDTQPGLSTERYTWDSDHQPDYNDILSQRIQSSQRALGLEV.
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Template Sequence  SGLEIGLDRGWSASGGRWYAGGLLGYTYADRTYPGDGGGKVKGLHVGGYAAYVGDGGYYLDTVLRLGRYDQQYNIAGTDG
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   773......780.........790.........800.........810.........820.........830.........840.........850..
 
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Query Sequence  . . NLAEETPVDVTSSMSMGWNFPLYEQVTTGPVAALHYDGTTTSMYNEFGDSTTTLTDPLWHASVSTLGWRVDSRL. . . .
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Template Sequence  GRVTADYRTSGAAWSLEGGRRFELPNDWFAEPQAEVMLWRTSGKRYRASNG. . LRVKVDANTATLGRLGLRFGRRIALAG
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   853......860.........870.........880.........890.........900... ......910.........920.........930
 
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Query Sequence  . GDLRPWAQISYNQQFGENIWKAQSGLSRMTATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTNNSDYLYTMGVSA
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Template Sequence  GNIVQPYARLGWTQEFKSTG. . . . . . . . . . . . . . . RHGRVELGAGVDAALGKGHNLYASYEYAAGDRINIPWSFHAGYRY
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   931........940.........950 .........960.........970.........980.........990.....
 
   231.
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Query Sequence  RF
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Template Sequence  SF
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   10091010
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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