Job Description P37663 Confidence 98.64% Date Thu Jan 5 11:56:36 GMT 2012 Rank 12 Aligned Residues 117 % Identity 18% Template c3nb3C_ PDB info PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components Resolution 19.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		P	V	D	V	T	S	S	M	S	M	G	W	N	F	P	L	Y	E	Q	V	T	T	G	P	V	A	A	L	H	Y	D	G	T	T	T	S	M	Y	N	E	F	G	D	S	T	T	T	L	T	D	P	L	W	H	A	S	V	S	T	L	G	W	R	V	D	S	R	L	.	G	D	L	R	P	W	A	Q	I	S	Y
Query Conservation																																																																						.
Alig confidence																	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	N	K	L	G	A	G	A	F	G	G	Y	Q	V	N	.	.	P	Y	V	G	F	E	M	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	W	L	G	R	M	P	Y	A	Y	K	A	Q	G	V	Q	L	T	A	K	L	G	Y	P	I	T	D	D	L	D	I	Y	T	R	L	G	G
Template Known Secondary structure																	.	.	T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									S	S	S	S
Template Predicted Secondary structure																	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.			.	.	.	50	.	.	.	.	.																		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Q	Q	F	G	E	N	I	W	K	A	Q	S	G	L	S	R	M	T	A	T	N	Q	N	G	N	W	L	D	V	T	V	G	A	D	M	L	L	N	Q	N	I	A	A	Y	A	A	L	T	Q	A	E	N	T	T	N	N	S	D	Y	L	Y	T	M	G	V	S	A	R	F
Query Conservation
Alig confidence				.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template Sequence		M	V	.	.	.	.	.	.	W	R	A	D	T	Y	S	N	V	Y	G	K	N	H	D	T	G	V	S	P	V	F	A	G	G	V	E	Y	A	I	T	P	E	I	A	T	R	L	E	Y	Q	W	T	.	.	.	.	.	.	.	N	G	M	L	S	L	G	V	S	Y	R	F
Template Known Secondary structure				.	.	.	.	.	.								S	S	S																						T	T											.	.	.	.	.	.	.
Template Predicted Secondary structure				.	.	.	.	.	.																																												.	.	.	.	.	.	.
Template SS confidence
		100	.							.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.								.	.	.	.	.	150	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions