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Job DescriptionP37663
Confidence98.64%DateThu Jan 5 11:56:36 GMT 2012
Rank12Aligned Residues117
% Identity18%Templatec3nb3C_
PDB info PDB header:virusChain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
Resolution19.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   84.....90.........100.........110.........120.........130.........140.........150. ........160..
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Query Sequence  PVDVTSSMSMGWNFPLYEQVTTGPVAALHYDGTTTSMYNEFGDSTTTLTDPLWHASVSTLGWRVDSRL. GDLRPWAQISY
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Template Sequence  ENKLGAGAFGGYQVN. . PYVGFEMGY. . . . . . . . . . . . . . . . . DWLGRMPYAYKAQGVQLTAKLGYPITDDLDIYTRLGG
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   32.......40...... ...50..... ....60.........70.........80.........90..
 
   163......170.........180.........190.........200.........210.........220.........230..
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Query Sequence  NQQFGENIWKAQSGLSRMTATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTNNSDYLYTMGVSARF
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Template Sequence  MV. . . . . . WRADTYSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWT. . . . . . . NGMLSLGVSYRF
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   100. ........110.........120.........130.........140.... .....150......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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