Return to main results Retrieve Phyre Job Id

Job DescriptionP17411
Confidence100.00%DateThu Jan 5 11:36:08 GMT 2012
Rank8Aligned Residues244
% Identity43%Templated1s6ya2
SCOP infoLDH C-terminal domain-like LDH C-terminal domain-like AglA-like glucosidase
Resolution2.31

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   173......180.........190.........200.........210.........220.........230.........240.........250..
Predicted Secondary structure 































Query SS confidence 















































































Query Sequence  NIPIGMKMFIRDVLMLKDSDDLSIDLFGLNHMVFIKDVLINGKSRFAELLDGVASGQLKASSVKNIFDLPFSEGLIRSLN
Query Conservation           
       
   
    




  
       
 
  
 
   
              
           
Alig confidence 















.







































............










Template Conservation 
 


     
  


.    
     



  
       
 
  
 
        ............       
  
Template Sequence  NVPIGXRXGVAKLLGV. DADRVHIDFAGLNHXVFGLHVYLDGVEVTEKVIDLVAHPL. . . . . . . . . . . . GWEPDFLKGLK
Template Known Secondary structure 
TS.
GGGTTTT
S


............



Template Predicted Secondary structure 




.






............


Template SS confidence 















































































   173......180........ .190.........200.........210.........220........ .230.........
 
   253......260.........270.........280.........290.........300.........310.........320.........330..
Predicted Secondary structure 

































Query SS confidence 















































































Query Sequence  LLPCSYLLYYFKQKEMLAIEMGEYYKGGARAQVVQKVEKQLFELYKNPELKVKPKELEQRGGAYYSDAACEVINAIYNDK
Query Conservation    
  

 

                   
                                    
 
  

 

  
 
Alig confidence 















































...........




















Template Conservation    
  

 

      
            
                  ...........       
 
  

 

    
Template Sequence  VLPCPYHRYYFQTDKXLAEELEAAKTKGTRAEVVQQLEKELFELYKDP. . . . . . . . . . . RGGAYYSDAACSLISSIYNDK
Template Known Secondary structure  SB

GGGSTT

TTTT

...........

S

T
Template Predicted Secondary structure 












...........







Template SS confidence 















































































   252.......260.........270.........280.........290......... 300.........310.........320
 
   333......340.........350.........360.........370.........380.........390.........400.........410..
Predicted Secondary structure 




























Query SS confidence 















































































Query Sequence  QAEHYVNIPHHGQIDNIPADWAVEMTCKLGRDGATPHPRITHFDDKVMGLIHTIKGFEIAASNAALSGEFNDVLLALNLS
Query Conservation       


 
 
 
  

 
  



  
   

 
   

 

     
       
 
 


   
    
  

  
Alig confidence 





































.








































Template Conservation       


 
 
 
 


 
 




  

  

 
  .

 

     

      
 
 



  

   
  

 

Template Sequence  RDIQPVNTRNNGAIASISAESAVEVNCVITKDGPKPIA. VGDLPVAVRGLVQQIKSFERVAAEAAVTGDYQTALVAXTIN
Template Known Secondary structure 


TTSBTTS
TTSTT

.
B




S
Template Predicted Secondary structure 


















.








Template SS confidence 















































































   335....340.........350.........360.........370.. .......380.........390.........400.........410...
 
   413......420.........430.........440.
Predicted Secondary structure 







Query SS confidence 




























Query Sequence  PLVHSDRDAELLAREMILAHEKWLPNFAD
Query Conservation 


 
   
  
 



 
    

    
Alig confidence 




























Template Conservation 


 
   
  





 
    

 
  
Template Sequence  PLVPSDTIAKQILDEXLEAHKEYLPQFFK
Template Known Secondary structure  TT


TGGG
TTT

Template Predicted Secondary structure 







Template SS confidence 




























   414.....420.........430.........440..
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions