Job Description P17411 Confidence 100.00% Date Thu Jan 5 11:36:08 GMT 2012 Rank 21 Aligned Residues 304 % Identity 15% Template c8ldhA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:m4 apo-lactate dehydrogenase; PDBTitle: refined crystal structure of dogfish m4 apo-lactate2 dehydrogenase Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	K	L	K	V	V	T	I	G	G	G	S	S	Y	T	P	E	L	L	E	G	F	I	K	R	Y	H	E	L	P	V	S	E	L	W	L	V	D	V	E	G	G	K	P	K	L	D	I	I	F	D	L	C	Q	R	M	I	D	N	A	G	V	P	M	K	L	Y	K	T	L	D	R	R	E	A	L	K	D	A
Query Conservation
Alig confidence																														.	.	.	.																															.	.	.	.
Template Conservation																														.	.	.	.																															.	.	.	.
Template Sequence		R	S	Y	N	K	I	T	V	V	G	V	G	A	V	G	M	A	C	A	I	S	I	L	M	K	D	L	A	.	.	.	.	D	E	V	A	L	V	D	V	M	E	D	K	L	K	G	E	M	M	D	L	Q	H	G	S	L	F	L	H	T	A	.	.	.	.	K	I	V	S	G	K	D	Y	S	V	S	A	G	S
Template Known Secondary structure				S	S								S												T	T	T			.	.	.	.	S							S															T	G	G	G					.	.	.	.						S	S	G	G	G	G	T	T
Template Predicted Secondary structure																														.	.	.	.																															.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.					.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.					.	.	.	.	80	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	V	T	T	Q	L	R	V	G	Q	L	P	A	R	E	L	D	E	R	I	P	L	S	H	G	Y	L	G	Q	E	T	N	G	A	G	G	L	F	K	G	L	R	T	I	P	V	I	F	D	I	V	K	D	V	E	E	L	C	P	N	A	W	V	I	N	F	T	N	P	A	G	M	V	T	E	A	V	Y	R
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	V	V	I	T	A	G	A	R	Q	Q	E	G	E	S	R	L	N	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	N	V	N	I	F	K	F	I	I	P	N	I	V	K	H	S	P	D	C	I	I	L	V	V	S	N	P	V	D	V	L	T	Y	V	A	W	K
Template Known Secondary structure		S												T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T							S	S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110																					.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	T	G	F	K	R	F	I	G	V	C	N	I	P	I	G	M	K	M	F	I	R	D	V	L	M	L	K	D	S	D	D	L	S	I	D	L	F	G	L	N	H	M	V	F	I	K	D	V	L	I	N	G	K	S	R	F	A	E	L	L	D	G	V	A	S	G	Q	L	K	A	S	S	V	K	N	I	F	D	L
Query Conservation
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	S	G	L	P	M	.	.	.	.	.	.	.	.	.	.	.	.	H	R	I	I	G	S	G	C	N	L	D	S	A	R	F	R	Y	L	M	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	R	L	G	V	H	S	C	S	C	H	G	W	V	I	G	E	H	G	D	S
Template Known Secondary structure				T			G	.	.	.	.	.	.	.	.	.	.	.	.	G	G					T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	S		T	T	T							B	S	S	S	T	T
Template Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		150	.	.	.	.	.													.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.																						.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		P	F	S	E	G	L	I	R	S	L	N	L	L	P	C	S	Y	L	L	Y	Y	F	K	Q	K	E	M	L	A	I	E	M	G	E	Y	Y	K	G	G	A	R	A	Q	V	V	Q	K	V	E	K	Q	L	F	E	L	Y	K	N	P	E	L	K	V	K	P	K	E	L	E	Q	R	G	G	A	Y	Y	S	.	.	D
Query Conservation																																																																															.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.										.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	P	S	V	W	S	G	M	N	V	A	S	I	K	.	.	.	.	.	.	.	.	.	.	.	.	.	L	H	P	L	D	G	T	N	K	D	K	Q	D	W	K	K	L	H	K	D	V	V	D	S	A	Y	E	V	I	.	.	.	.	.	.	.	.	.	.	.	.	K	L	K	G	Y	T	S	W	A	I	G	L
Template Known Secondary structure												T	T			.	.	.	.	.	.	.	.	.	.	.	.	.					S	S			S	S	S	S	S	S	T															.	.	.	.	.	.	.	.	.	.	.	.				S	S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210														.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.													240	.	.	.	.	.	.	.	.	.	250	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	C	E	V	I	N	A	I	Y	N	D	K	Q	A	E	H	Y	V	N	I	P	H	H	G	Q	I	D	N	I	P	A	D	W	A	V	E	M	T	C	K	L	G	R	D	G	A	T	P	H	P	R	I	T	H	F	D	D	K	V	M	G	L	I	H	T	I	K	G	F	E	I	A
Query Conservation
Alig confidence																													.
Template Conservation																													.
Template Sequence		S	V	A	D	L	A	E	T	I	M	K	N	L	C	R	V	H	P	V	S	T	M	V	K	D	F	Y	.	G	I	K	D	N	V	F	L	S	L	P	C	V	L	N	D	H	G	I	S	N	I	V	K	M	K	L	K	P	N	E	E	Q	Q	L	Q	K	S	A	T	T	L	W	D	I
Template Known Secondary structure												T	T												T	T	S	S	.	S			S	S											T	T
Template Predicted Secondary structure																													.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions