Job Description P17411 Confidence 100.00% Date Thu Jan 5 11:36:08 GMT 2012 Rank 38 Aligned Residues 317 % Identity 16% Template c7mdhA_ PDB info PDB header:chloroplastic malate dehydrogenase Chain: A: PDB Molecule:protein (malate dehydrogenase); PDBTitle: structural basis for light acitvation of a chloroplast enzyme. the2 structure of sorghum nadp-malate dehydrogenase in its oxidized form Resolution 2.40 Å

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		2	.	.	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.																			.
Query SS confidence													.																			.
Query Sequence		S	Q	K	L	K	V	V	T	I	G	G	.	G	S	S	Y	T	P	E	L	L	E	G	F	I	K	R	Y	H	E	.	L	P	V	S	E	L	W	L	V	D	V	E	G	G	K	P	K	L	D	I	I	F	D	L	C	Q	R	M	I	D	N	A	G	V	P	M	K	L	Y	K	T	L	D	R	R	E	A	L	K
Query Conservation													.																			.
Alig confidence													.																			.																													.	.
Template Conservation																																																													.	.
Template Sequence		K	K	L	V	N	I	A	V	S	G	A	A	G	M	I	S	N	H	L	L	F	K	L	A	S	G	E	V	F	G	Q	D	Q	P	I	A	L	K	L	L	G	S	E	R	S	F	Q	A	L	E	G	V	A	M	E	L	E	D	S	.	.	L	Y	P	L	L	R	E	V	S	I	G	I	D	P	Y	E	V	F	E
Template Known Secondary structure											T	T	T	S													T	T	T	T		T	T											G	G	G													T	T	.	.	T		T	T								S						T	T
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.			.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140		.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		D	A	D	F	V	T	T	Q	L	R	V	G	Q	L	P	A	R	E	L	D	E	R	I	P	L	S	H	G	Y	L	G	Q	E	T	N	G	A	G	G	L	F	K	G	L	R	T	I	P	V	I	F	D	I	V	K	D	V	E	E	L	C	.	P	N	A	W	V	I	N	F	T	N	P	A	G	M	V	T	E	A
Query Conservation																																																															.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	V	D	W	A	L	L	I	G	A	K	P	R	G	P	G	M	E	R	A	A	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	I	N	G	Q	I	F	A	D	Q	G	K	A	L	N	A	V	A	S	K	N	V	K	V	L	V	V	G	N	P	C	N	T	N	A	L	I
Template Known Secondary structure		T		S												T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		S		T	T							S	S	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.																					.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		V	Y	R	H	T	G	F	K	R	F	I	G	V	C	N	I	P	I	G	M	K	M	F	I	R	D	V	L	M	L	K	D	S	D	D	L	S	I	D	L	F	G	L	N	H	M	V	F	I	K	D	V	L	I	N	G	K	S	R	F	A	E	L	L	D	G	V	A	S	G	Q	L	K	A	S	S	V	.	K	N
Query Conservation																																																																															.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.
Template Conservation											.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	L	K	N	A	P	D	I	P	.	.	.	.	.	.	.	.	.	.	.	.	A	K	N	F	H	A	L	T	R	L	D	E	N	R	A	K	C	Q	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	A	G	V	F	Y	D	K	V	S	N	V	T	I	W	G	N
Template Known Secondary structure					T		T	T	S		.	.	.	.	.	.	.	.	.	.	.	.	G	G	G																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T	T	S		G	G	G								B
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190													.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210																						.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	D	L	P	F	S	E	G	L	I	R	S	L	N	L	L	P	C	S	Y	L	L	Y	Y	F	K	Q	K	E	M	L	A	I	E	M	G	E	Y	Y	K	G	G	A	R	A	Q	V	V	Q	K	V	E	K	Q	L	F	E	L	Y	K	N	P	E	L	K	V	K	P	K	E	L	E	Q	R	G	G	A	Y	Y
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	S	T	T	Q	V	P	D	F	L	N	A	K	I	D	G	R	P	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	I	K	R	T	K	W	L	E	E	E	F	T	I	T	V	Q	K	R	G	G	A	L	I	Q	K	W	G	R	S	S	A	A
Template Known Secondary structure		S	S	T	T						S	S				T	T			G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T																	T									T	S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.																											.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
		318	.			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.			.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure				.	.																.	.
Query SS confidence				.	.																.	.
Query Sequence		S	D	.	.	A	A	C	E	V	I	N	A	I	Y	N	D	K	Q	A	.	.	E	H	Y	V	N	I	P	H	H	G	Q	I	D	N	I	P	A	D	W	A	V	E	M	T	C	K	L	G	R	D	G	A	T	P	H	P	R	I	T	H	F	D	D	K	V	M	G	L	I	H	T	I	K	G	F	E	I	A	A
Query Conservation				.	.																.	.
Alig confidence				.	.																.	.
Template Conservation
Template Sequence		S	T	A	V	S	I	A	D	A	I	K	S	L	V	T	P	T	P	E	G	D	W	F	S	T	G	V	Y	T	T	G	N	P	Y	G	I	A	E	D	I	V	F	S	M	P	C	R	S	K	G	D	G	D	Y	E	L	A	T	D	V	S	N	D	D	F	L	W	E	R	I	K	K	S	E	A	E	L	L	A	E
Template Known Secondary structure																S				T	T										T	T		S	S				S	S	S										S	S	S
Template Predicted Secondary structure
Template SS confidence
		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
		394	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	A	A	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K	C	V	A	H
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		363	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions