 |
Job Description | P17411 | Confidence | 92.17% | Date | Thu Jan 5 11:36:08 GMT 2012 |
Rank | 420 | Aligned Residues | 85 |
% Identity | 16% | Template | c3oqbF_ |
PDB info |
PDB header:oxidoreductase | Chain: F: PDB Molecule:oxidoreductase; |
PDBTitle: crystal structure of putative oxidoreductase from bradyrhizobium2 japonicum usda 110
|
Resolution | 2.60 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 30 | . | . | . | . | |
|
|
|
|
|
. | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | K | L | K | V | V | T | I | G | G | G | S | S | Y | T | P | E | L | . |
. |
. |
. |
. |
. |
. |
L | E | G | F | I | K | R | Y | H | E | L | P | V | S | . |
. |
. |
. |
. |
. |
E | L | W | L | V | D | V | E | G | G | K | P | K | L | D | I | I | F | D | L | C | Q | R | M | I | D | N | A | G | V | P | M | K | L | Y |
Query Conservation |   |
|   |   |
|
|   |
|
|
|
|
|
|   |   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |
|   |   |   |   |   |
|   |   |   | . | . | . | . | . | . |
|
|   |
|   |
|
|
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
Template Conservation |   |
  |   |   |
|
|
|
|
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |   |   |
|   |   | . | . | . |   |
Template Sequence |   |
T | T | Q | R | L | G | L | I | X | N | G | V | T | G | R | X | G | L | N | Q | H | L | I | R | S | I | V | A | I | R | D | Q | G | G | V | R | L | K | N | G | D | R | I | X | P | D | P | I | L | V | G | R | S | A | E | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
V | E | A | L | A | K | R | F | N | I | A | . |
. |
. |
R |
Template Known Secondary structure |   |
|  |  |  |  |  |  |  |  |
| S | T | T | S |  |  |  |  |  | T | T | T | T | T | T |  |  |  |  |  |  |  | T | S |  |  |
| T | T | S |
|  |  |  |  |  |  |  |  |
|
| S |
|  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | T |
|
| . | . | . |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
| . | . | . |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
. | 60 | . | . | . | . | . | . | . | . | . | |
|
|
70 |
  |
  |   |
70 | . | . | . | . | . | . | . | . | |
|
. | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  | . | . |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
K | T | L | D | R | R | E | A | L | . |
. |
K | D | A | D | F | V | T | T | Q | L | R | V | G | Q | L | P | A | R | E | L | D |
Query Conservation |   |
  |
|
|
|   |   |   |
|
| . | . |   |   |
|
|
|
|
|   |
|   |   |
|
|
|   |   |   |
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |   |   |
|
|   |   |   |   |
|
|
|
|   |
|   |
|
|   |   |   |
|   |   |   |   |   |   |
Template Sequence |   |
W | T | T | D | L | D | A | A | L | A | D | K | N | D | T | X | F | F | D | A | A | T | T | Q | A | R | P | G | L | L | T | Q |
Template Known Secondary structure |   |
 |
| S |
|  |  |  |  |  |  |
| T | T |
|
|  |  |  |  |
| S |
| T | T | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
71 | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|