 |
Job Description | P17411 | Confidence | 94.17% | Date | Thu Jan 5 11:36:08 GMT 2012 |
Rank | 371 | Aligned Residues | 70 |
% Identity | 19% | Template | c3ip3D_ |
PDB info |
PDB header:oxidoreductase | Chain: D: PDB Molecule:oxidoreductase, putative; |
PDBTitle: structure of putative oxidoreductase (tm_0425) from2 thermotoga maritima
|
Resolution | 2.14 Å |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | |
|
. | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | |
|
. |
Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  | . | . |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  | . | . |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
Query Sequence |   |
K | L | K | V | V | T | I | G | G | G | S | S | Y | T | P | E | L | L | E | G | F | I | K | R | Y | H | E | L | P | V | S | E | L | W | . |
. |
L | V | D | V | E | G | G | K | P | K | L | D | I | I | F | D | L | C | Q | R | M | I | D | N | A | G | V | P | M | K | L | Y | K | T | L | D | R | R | E | A | L | . |
. |
K |
Query Conservation |   |
  |   |
|
|   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|   | . | . |
|   |
|
|
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |
|
| . | . |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
| . | . |
|
Template Conservation |   |
  |
|
|
|
|
|
|
|   |
|   |   |   |   |   | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   | . | . | . | . | . | . | . | . | . |   |   |   |   |
|   |   |   |   |   |   |   |   | . | . |   |
|   |   |   |   |
|   |
|   |   |   |
Template Sequence |   |
S | L | K | I | C | V | I | G | S | S | G | H | F | R | Y | . |
. |
. |
. |
A | L | E | G | L | D | E | E | C | S | I | T | G | I | A | P | G | V | P | E | E | D | L | S | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
L | E | K | A | I | S | E | X | N | I | K | P | K | . |
. |
K | Y | N | N | W | W | E | X | L | E | K | E |
Template Known Secondary structure |   |
|  |  |  |  |  |  |
| S | S | S |
| T |  |  | . | . | . | . |  |  | T | T |
|
| T | T |  |  |  |  |  |  |  |
| S | S | T | T |
|
|
|  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  | T | T | T |
|
|
|  | . | . |  |
| S |
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
|
|  |  |  |  |  |
|
|
|  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
|
|  |  |  | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |
|
|
|
|  | . | . |  |  |
|
|  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | |
|
|
|
. | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | |
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 50 | . | . | . | |
|
. | . | . | . | . | . | 60 | . | . | . | . | . |
  |
  |   |
80 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | A | D | F | V | T | T | Q | L |
Query Conservation |   |
  |
|
|
|
|
|   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |
|   |
|   |
|
Template Sequence |   |
K | P | D | I | L | V | I | N | T |
Template Known Secondary structure |   |
|
| S |  |  |  |  |
| S |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
  |   |
66 | . | . | . | 70 | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|