 |
Job Description | P17411 | Confidence | 94.41% | Date | Thu Jan 5 11:36:08 GMT 2012 |
Rank | 365 | Aligned Residues | 76 |
% Identity | 17% | Template | c3gd5D_ |
PDB info |
PDB header:transferase | Chain: D: PDB Molecule:ornithine carbamoyltransferase; |
PDBTitle: crystal structure of ornithine carbamoyltransferase from gloeobacter2 violaceus
|
Resolution | 2.10 Å |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | K | L | K | V | V | T | I | G | G | G | S | S | Y | T | P | E | L | L | E | G | F | I | K | R | Y | H | E | L | P | V | S | E | L | W | L | V | D | V | E | G | G | K | P | K | L | D | I | I | F | D | L | C | Q | R | M | I | D | N | A | G | V | P | M | K | L | Y | K | T | L | D | R | R | E | A | L | K | D | A | D |
Query Conservation |   |
|   |   |
|
|   |
|
|
|
|
|
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|   |
|   |
|
|
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|
|   |   |   |
|
|   |   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |   |
|
|
|   |   | . | . | . | . |   |
|   |   |
|   |   |   |   |   |   |   |   | . |
|   |   |
|   |   |   |   |
|   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   | . | . |   |   |   |   |   |
|
|   |   |   |
|
|
Template Sequence |   |
A | G | L | K | L | A | Y | V | G | D | G | N | . |
. |
. |
. |
N | V | A | H | S | L | L | L | G | C | A | K | V | . |
G | M | S | I | A | V | A | T | P | E | G | . |
F | T | P | D | P | A | V | S | A | R | A | S | E | I | A | G | R | T | G | A | E | V | Q | I | . |
. |
L | R | D | P | F | E | A | A | R | G | A | H |
Template Known Secondary structure |   |
T | T |
|  |  |  |  |  | S |
|
|
| . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |
|  |  |  |  |  |
|
| T | T | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  | . | . |  | S |
|  |  |  |  |  | T | T |
| S |
Template Predicted Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
| . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|  |  |  |  |  |
|
|  |  | . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  | . | . |  |  |
|  |  |  |  |  |
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
156 | . | . | . | 160 | . | . | . | . | . | . | . | |
|
|
|
. | . | 170 | . | . | . | . | . | . | . | . | . | 180 | |
. | . | . | . | . | . | . | . | . | 190 | . | |
. | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | |
|
. | . | . | . | 220 | . | . | . | . | . | . | . |
  |
  |   |
83 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
F | V | T | T |
Query Conservation |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
Template Conservation |   |
|
|
|
|
Template Sequence |   |
I | L | Y | T |
Template Known Secondary structure |   |
 |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
Template SS confidence |   |
|
|
|
|
  |   |
228 | . | 230 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|