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Job DescriptionP17411
Confidence100.00%DateThu Jan 5 11:36:08 GMT 2012
Rank22Aligned Residues307
% Identity18%Templatec3d0oA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:l-lactate dehydrogenase 1; PDBTitle: crystal structure of lactate dehydrogenase from2 staphylococcus aureus
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30.........40.........50.........60.........70.........80.
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Query Sequence  SQKLKVVTIGGGSSYTPELLEGFIKRYHELPVSELWLVDVEGGKPKLDIIFDLCQRMIDNAGVPMKLYKTLDRREALKDA
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Template Sequence  FKGNKVVLIGNGAVGSSYAFSLVNQSI. . . . VDELVIIDLD. . TEKVRGDVMDLKHATPYSPTTVRV. . KAGEYSDCHDA
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S
S....
S
S
..GGGSSS

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GGGGTT
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   4.....10.........20.........30 .........40 .........50.........60.... .....70.....
 
   82.......90.........100.........110.........120.........130.........140.........150.........160.
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Query Sequence  DFVTTQLRVGQLPARELDERIPLSHGYLGQETNGAGGLFKGLRTIPVIFDIVKDVEELCPNAWVINFTNPAGMVTEAVYR
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Template Sequence  DLVVICAGAAQKPGETRLDLV. . . . . . . . . . . . . . . . . . . . SKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWK
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TT

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S
SSS
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   76...80.........90...... ...100.........110.........120.........130.....
 
   162.......170.........180.........190.........200.........210.........220.........230.........240.
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Query Sequence  HTGFKRFIGVCNIPIGMKMFIRDVLMLKDSDDLSIDLFGLNHMVFIKDVLINGKSRFAELLDGVASGQLKASSVKNIFDL
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Template Sequence  FSGLPK. . . . . . . . . . . . ERVIGSGTILDSARFRLLLS. . . . . . . . . . . . . . . . . . . . . EAFDVAPRSVDAQIIGEHGDT
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G............GG
TT.....................TS
GGG
B

B
SSTT
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   136...140. ........150.........160. ........170.........180..
 
   242.......250.........260.........270.........280.........290.........300.........310.........320
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Query Sequence  PFSEGLIRSLNLLPCSYLLYYFKQKEMLAIEMGEYYKGGARAQVVQKVEKQLFELYKNPELKVKPKELEQRGGAYYSDA.
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Template Sequence  ELPVWSHANIAGQPLKTL. . . . . . . . . . . . . . . . . . . . . . . . LEQRPEGKAQIEQIFVQTRDAAYDIIQAKGATYYGVAM
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TTT
TT........................TSTTTS


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   183......190.........200 .........210.........220.........230........
 
   321........330.........340.........350.........360.........370.........380.........390.....
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Query Sequence  . ACEVINAIYNDKQAEHYVNIPHHGQIDNIPADWAVEMTCKLGRDGATPHPRITHFDDKVMGLIHTIKGFEIAASN
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Template Sequence  GLARITEAIFRNEDAVLTVSALLEGEYE. . EEDVYIGVPAVINRNGIRNVVEIPLNDEEQSKFAHSAKTLKDIMAE
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SGGG..
TT






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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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