Return to main results Retrieve Phyre Job Id

Job DescriptionP17411
Confidence100.00%DateThu Jan 5 11:36:08 GMT 2012
Rank15Aligned Residues302
% Identity18%Templatec2v65A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:l-lactate dehydrogenase a chain; PDBTitle: apo ldh from the psychrophile c. gunnari
Resolution2.35 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1........10.........20.........30.........40.........50.........60.........70.........80
Predicted Secondary structure 





























Query SS confidence 















































































Query Sequence  MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVSELWLVDVEGGKPKLDIIFDLCQRMIDNAGVPMKLYKTLDRREALKD
Query Conservation 
 
  

 





          
     
   

 
 


     
  
                
  


   

  
Alig confidence 





























....




















....















.



Template Conservation 
    

 




 

   
  
       ....

 
 
           

  ....        
  
 
  .

  
Template Sequence  VGSRSKVTVVGVGMVGMASAISILLKDLCD. . . . ELAMVDVMEDKLKGEVMDLQH. . . . GSLFLKTKIVGDKDYS. VTAN
Template Known Secondary structure 


SS


STT

S....
S
T....TGGG

S
SSGG.GGTT
Template Predicted Secondary structure 













....

....







.

Template SS confidence 















































































   17..20.........30.........40...... ...50.........60....... ..70.........80... ....
 
   81........90.........100.........110.........120.........130.........140.........150.........160
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  ADFVTTQLRVGQLPARELDERIPLSHGYLGQETNGAGGLFKGLRTIPVIFDIVKDVEELCPNAWVINFTNPAGMVTEAVY
Query Conservation 




 
  


   
  

 

 
 
   


 
 

   







  

  
    






 


  


 
  
Alig confidence 



















........................



































Template Conservation 







  
  
   
  ........................
  
   
   
    
 
 

 



    
    
Template Sequence  SKVVVVTAGAGESRLNLVQR. . . . . . . . . . . . . . . . . . . . . . . . NVNIFKFIIPNIVKYSPNCILMVVSNPVDILTYVAW
Template Known Secondary structure 
S






........................
TT

SSS
Template Predicted Secondary structure 







........................





Template SS confidence 















































































   91........100.........110 .........120.........130.........140......
 
   161.... ....170....... ..180.........190.........200.........210.........220.........230......
Predicted Secondary structure 


..





..






















Query SS confidence 




. .











. .


























































Query Sequence  RHTGF. . KRFIGVCNIPIG. . MKMFIRDVLMLKDSDDLSIDLFGLNHMVFIKDVLINGKSRFAELLDGVASGQLKASSVK
Query Conservation 
    .. 
 



     ..    
       
   
    




  
       
 
  
 
   
           
Alig confidence 




..











..










.





....................................




Template Conservation 
 

    



  
 


 
    

  
 
.    
 ....................................  


Template Sequence  KLSGFPRHRVIGSGTNLDSARFRHLIGEKLHL. HPSSCH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . AWIVG
Template Known Secondary structure  TT


GGG
TTT
.
GGG....................................

B
Template Predicted Secondary structure 








.
....................................
Template SS confidence 















































































   151........160.........170.........180.. ...... .190...
 
   237..240.........250.........260.........270.........280.........290.........300.........310......
Predicted Secondary structure 




































Query SS confidence 















































































Query Sequence  NIFDLPFSEGLIRSLNLLPCSYLLYYFKQKEMLAIEMGEYYKGGARAQVVQKVEKQLFELYKNPELKVKPKELEQRGGAY
Query Conservation     
           
  
  

 

                   
                                  
Alig confidence 


















..........































............






Template Conservation   

   

  
   
 
  ..........                             

 ............  

 
 
Template Sequence  EHGDSSVPVWSGVNVAGVS. . . . . . . . . . LQGLNPQMGTEGDGENWKAIHKEVVDGAYEVI. . . . . . . . . . . . KLKGYTS
Template Known Secondary structure  SSSTT

GGG
TT..........
TTTTSTT
TT
T............S


Template Predicted Secondary structure 







..........





............





Template SS confidence 















































































   194.....200.........210.. .......220.........230.........240.... .....250.
 
   317. .320.........330.........340.........350.........360.........370.........380.........390....
Predicted Secondary structure  ..



























Query SS confidence 

. .











































































Query Sequence  YS. . DAACEVINAIYNDKQAEHYVNIPHHGQIDNIPADWAVEMTCKLGRDGATPHPRITHFDDKVMGLIHTIKGFEIAAS
Query Conservation    ..
 
  

 

  
      


 
 
 
  

 
  



  
   

 
   

 

     
       
 
 
Alig confidence 

..



























.






















.






















Template Conservation   
 
 
   

 

  
   
  
 
   
 
.

      
 
  

  

  
 .   
   
   
  
   

   
Template Sequence  WAIGMSVADLVESIIKNMHKVHPVSTLVQGMH. GVKDEVFLSVPCVLGNSGLTDVI. HMTLKAEEEKQLQKSAETLWGVQ
Template Known Secondary structure  TT


TTST.T

SS
TT
.




Template Predicted Secondary structure 







.








.




Template SS confidence 















































































   248.250.........260.........270......... 280.........290.........300.. .......310.........320.....
 
   395.
Predicted Secondary structure 
Query SS confidence 

Query Sequence  NA
Query Conservation 

Alig confidence 

Template Conservation    
Template Sequence  KE
Template Known Secondary structure  T
Template Predicted Secondary structure 
Template SS confidence 

   327.
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions