Job Description P17411 Confidence 100.00% Date Thu Jan 5 11:36:08 GMT 2012 Rank 14 Aligned Residues 303 % Identity 18% Template c2ldxA_ PDB info PDB header:oxidoreductase(choh(d)-nad(a)) Chain: A: PDB Molecule:apo-lactate dehydrogenase; PDBTitle: characterization of the antigenic sites on the refined 3-2 angstroms resolution structure of mouse testicular lactate3 dehydrogenase c4 Resolution 2.96 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	K	L	K	V	V	T	I	G	G	G	S	S	Y	T	P	E	L	L	E	G	F	I	K	R	Y	H	E	L	P	V	S	E	L	W	L	V	D	V	E	G	G	K	P	K	L	D	I	I	F	D	L	C	Q	R	M	I	D	N	A	G	V	P	M	K	L	Y	K	T	L	D	R	R	E	A	L	K	D	A
Query Conservation
Alig confidence																													.	.	.	.																										.	.	.	.
Template Conservation																													.	.	.	.																										.	.	.	.
Template Sequence		L	S	R	C	K	I	T	V	V	G	V	G	D	V	G	M	A	C	A	I	S	I	L	L	K	G	L	.	.	.	.	A	D	E	L	A	L	V	D	A	D	T	D	K	L	R	G	E	A	L	D	L	Q	H	G	S	.	.	.	.	L	F	L	S	T	P	K	I	V	F	G	K	D	Y	N	V	S	A	N	S
Template Known Secondary structure													S												T	T	T	S	.	.	.	.		S							S															T	T	.	.	.	.	T	T		S								S	S	G	G	G	G	T	T
Template Predicted Secondary structure																													.	.	.	.																										.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.					.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.					.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	F	V	T	T	Q	L	R	V	G	Q	L	P	A	R	E	L	D	E	R	I	P	L	S	H	G	Y	L	G	Q	E	T	N	G	A	G	G	L	F	K	G	L	R	T	I	P	V	I	F	D	I	V	K	D	V	E	E	L	C	P	N	A	W	V	I	N	F	T	N	P	A	G	M	V	T	E	A	V	Y	R
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	V	I	I	T	A	G	A	R	M	V	S	G	Q	T	R	L	D	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	N	V	A	I	M	K	A	I	V	P	G	V	I	Q	N	S	P	D	C	K	I	I	V	V	T	N	P	V	D	I	L	T	Y	V	V	W	K
Template Known Secondary structure									S					T	T	T		S	S		T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											T	T	T					S	T	T							S	S	S
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.																					110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
		162	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure							.	.												.	.
Query SS confidence							.	.												.	.
Query Sequence		H	T	G	F	K	.	.	R	F	I	G	V	C	N	I	P	I	G	.	.	M	K	M	F	I	R	D	V	L	M	L	K	D	S	D	D	L	S	I	D	L	F	G	L	N	H	M	V	F	I	K	D	V	L	I	N	G	K	S	R	F	A	E	L	L	D	G	V	A	S	G	Q	L	K	A	S	S	V	K	N
Query Conservation							.	.												.	.
Alig confidence							.	.												.	.												.												.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.												.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	G	F	P	V	G	R	V	I	G	S	G	C	N	L	D	S	A	R	F	R	Y	L	I	G	E	K	L	G	V	.	N	P	T	S	C	H	G	W	V	L	G	.	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S		T	T	T					T	T																T		.		T	T	S	S							.		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.												.			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190		.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	D	L	P	F	S	E	G	L	I	R	S	L	N	L	L	P	C	S	Y	L	L	Y	Y	F	K	Q	K	E	M	L	A	I	E	M	G	E	Y	Y	K	G	G	A	R	A	Q	V	V	Q	K	V	E	K	Q	L	F	E	L	Y	K	N	P	E	L	K	V	K	P	K	E	L	E	Q	R	G	G	A	Y	Y
Query Conservation
Alig confidence		.																						.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.																						.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	G	D	S	S	V	P	I	W	S	G	V	N	V	A	G	V	T	L	K	S	L	.	.	.	.	.	.	.	.	.	.	N	P	A	I	G	T	D	K	N	K	Q	H	W	K	N	V	H	K	Q	V	V	E	G	G	Y	E	V	L	D	.	.	.	.	.	.	.	.	.	.	.	.	M	K	G	Y	T	S	W
Template Known Secondary structure		.	S	S						G	G	G		B	S	S		S	S	S	S	B	S	.	.	.	.	.	.	.	.	.	.	T	T	T		S		S	S	S	S	S	S																		.	.	.	.	.	.	.	.	.	.	.	.			S	S
Template Predicted Secondary structure		.																						.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
			193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.											.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.													.	.	.	.	.	.	.
		318			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		S	.	.	D	A	A	C	E	V	I	N	A	I	Y	N	D	K	Q	A	E	H	Y	V	N	I	P	H	H	G	Q	I	D	N	I	P	A	D	W	A	V	E	M	T	C	K	L	G	R	D	G	A	T	P	H	P	R	I	T	H	F	D	D	K	V	M	G	L	I	H	T	I	K	G	F	E	I	A
Query Conservation			.	.
Alig confidence			.	.																													.
Template Conservation																																	.
Template Sequence		A	I	G	L	S	V	T	D	L	A	R	S	I	L	K	N	L	K	R	V	H	P	V	T	T	L	V	K	G	F	H	.	G	I	K	E	E	V	F	L	S	I	P	C	V	L	G	E	S	G	I	T	D	F	V	K	V	N	M	T	A	E	E	E	G	L	L	K	K	S	A	D	T	L	W	N	M
Template Known Secondary structure																T	T												T	T	S	T	.	T			S	S											T	T
Template Predicted Secondary structure																																	.
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280		.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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