Job Description P17411 Confidence 100.00% Date Thu Jan 5 11:36:08 GMT 2012 Rank 19 Aligned Residues 304 % Identity 20% Template c2hjrK_ PDB info PDB header:oxidoreductase Chain: K: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of cryptosporidium parvum malate2 dehydrogenase Resolution 2.20 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	Q	K	L	K	V	V	T	I	G	G	G	S	S	Y	T	P	E	L	L	E	G	F	I	K	R	Y	H	E	L	P	V	S	E	L	W	L	V	D	V	E	G	G	K	P	K	L	D	I	I	F	D	L	C	Q	R	M	I	D	N	A	G	V	P	M	K	L	Y	K	T	L	D	R	R	E	A	L	K	D
Query Conservation
Alig confidence					.	.																									.	.	.	.	.											.	.																														.
Template Conservation					.	.																									.	.	.	.	.											.	.																														.
Template Sequence		M	R	K	.	.	K	I	S	I	I	G	A	G	Q	I	G	S	T	I	A	L	L	L	G	Q	K	D	L	G	.	.	.	.	.	D	V	Y	M	F	D	I	I	E	G	.	.	V	P	Q	G	K	A	L	D	L	N	H	C	M	A	L	I	G	S	P	A	K	I	F	G	E	N	N	Y	E	.	Y	L	Q	N
Template Known Secondary structure					.	.								S													T	T		S	.	.	.	.	.							S	S	T	T	.	.																	T									S		G	G	.	G	G	T	T
Template Predicted Secondary structure					.	.																									.	.	.	.	.											.	.																														.
Template SS confidence
		13	.	.			.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	F	V	T	T	Q	L	R	V	G	Q	L	P	A	R	E	L	D	E	R	I	P	L	S	H	G	Y	L	G	Q	E	T	N	G	A	G	G	L	F	K	G	L	R	T	I	P	V	I	F	D	I	V	K	D	V	E	E	L	C	P	N	A	W	V	I	N	F	T	N	P	A	G	M	V	T	E	A	V	Y
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	V	V	I	I	T	A	G	V	P	R	K	P	N	M	T	R	S	D	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	N	A	K	I	V	G	S	V	A	E	N	V	G	K	Y	C	P	N	A	F	V	I	C	I	T	N	P	L	D	A	M	V	Y	Y	F	K
Template Known Secondary structure			S							S					T	T			S	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T	S							S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
		161	.	.	.	.	.			.	.	.	170	.	.	.	.	.			.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure								.	.										.	.
Query SS confidence								.	.										.	.
Query Sequence		R	H	T	G	F	K	.	.	R	F	I	G	V	C	N	I	P	.	.	I	G	M	K	M	F	I	R	D	V	L	M	L	K	D	S	D	D	L	S	I	D	L	F	G	L	N	H	M	V	F	I	K	D	V	L	I	N	G	K	S	R	F	A	E	L	L	D	G	V	A	S	G	Q	L	K	A	S	S	V	K
Query Conservation								.	.										.	.
Alig confidence								.	.										.	.														.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	K	S	G	I	P	A	N	K	V	C	G	M	S	G	V	L	D	S	A	R	F	R	C	N	L	S	R	A	L	G	V	.	K	P	S	D	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	I	V	V	G
Template Known Secondary structure								G	G	G																						T	S	.		G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					B
Template Predicted Secondary structure																																		.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180																																					.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																					.
Query SS confidence																					.
Query Sequence		N	I	F	D	L	P	F	S	E	G	L	I	R	S	L	N	L	L	P	.	C	S	Y	L	L	Y	Y	F	K	Q	K	E	M	L	A	I	E	M	G	E	Y	Y	K	G	G	A	R	A	Q	V	V	Q	K	V	E	K	Q	L	F	E	L	Y	K	N	P	E	L	K	V	K	P	K	E	L	E	Q	R	G	G	A
Query Conservation																					.
Alig confidence																					.																.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Sequence		G	H	G	D	E	M	I	P	L	T	S	S	V	T	I	G	G	I	L	L	S	D	F	V	E	Q	G	K	I	T	H	S	Q	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	I	K	K	T	A	F	G	G	G	E	I	V	E	.	.	.	.	.	.	.	.	.	.	L	L	K	T	G	S	A
Template Known Secondary structure			S	S	T	T					G	G	G				T	T									T	T	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.								T								.	.	.	.	.	.	.	.	.	.			S	S
Template Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220														.	.	.	.	.	.	.	.	.	230	.	.	.	.	.											.	.	.	.	240	.	.
		316	.	.			.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure					.	.
Query SS confidence					.	.
Query Sequence		Y	Y	S	.	.	D	A	A	C	E	V	I	N	A	I	Y	N	D	K	Q	A	E	H	Y	V	N	I	P	H	H	G	Q	I	D	N	I	P	A	D	W	A	V	E	M	T	C	K	L	G	R	D	G	A	T	P	H	P	R	I	T	H	F	D	D	K	V	M	G	L	I	H	T	I	K	G	F	E	I	A	A
Query Conservation					.	.
Alig confidence					.	.																														.	.																						.
Template Conservation																																				.	.																						.
Template Sequence		F	Y	A	P	A	A	S	A	V	A	M	A	Q	A	Y	L	K	D	S	K	S	V	L	V	C	S	T	Y	L	T	G	Q	Y	N	.	.	V	N	N	L	F	V	G	V	P	V	V	I	G	K	N	G	I	E	D	V	V	.	I	V	N	L	S	D	D	E	K	S	L	F	S	K	S	V	E	S	I	Q	N	L
Template Known Secondary structure																		T	T													S	G	G	G	.	.														T	T							.
Template Predicted Secondary structure																																				.	.																						.
Template SS confidence
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.			.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		394	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	N	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	Q	D	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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