Job Description P17411 Confidence 100.00% Date Thu Jan 5 11:36:08 GMT 2012 Rank 18 Aligned Residues 313 % Identity 19% Template c2fnzA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:lactate dehydrogenase; PDBTitle: crystal structure of the lactate dehydrogenase from cryptosporidium2 parvum complexed with cofactor (b-nicotinamide adenine dinucleotide)3 and inhibitor (oxamic acid) Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	Q	K	L	K	V	V	T	I	G	G	G	S	S	Y	T	P	E	L	L	E	G	F	I	K	R	Y	H	E	L	P	V	S	E	L	W	L	V	D	V	E	G	G	K	P	K	L	D	I	I	F	D	L	C	Q	R	M	I	D	N	A	G	V	P	M	K	L	Y	K	T	L	D	R	R	E	A	L	K	D
Query Conservation
Alig confidence																															.	.	.	.	.																			.	.																						.
Template Conservation																															.	.	.	.	.																			.	.																						.
Template Sequence		M	I	E	R	R	K	I	A	V	I	G	S	G	Q	I	G	G	N	I	A	Y	I	V	G	K	D	N	L	A	.	.	.	.	.	D	V	V	L	F	D	I	A	E	G	I	P	Q	G	K	A	L	D	.	.	I	T	H	S	M	V	M	F	G	S	T	S	K	V	I	G	T	N	D	Y	A	.	D	I	S	G
Template Known Secondary structure														S														T		S	.	.	.	.	.							S	S	S	S									.	.									T											G	G	.	G	G	T	T
Template Predicted Secondary structure																															.	.	.	.	.																			.	.																						.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.		.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	F	V	T	T	Q	L	R	V	G	Q	L	P	A	R	E	L	D	E	R	I	P	L	S	H	G	Y	L	G	Q	E	T	N	G	A	G	G	L	F	K	G	L	R	T	I	P	V	I	F	D	I	V	K	D	V	E	E	L	C	P	N	A	W	V	I	N	F	T	N	P	A	G	M	V	T	E	A	V	Y
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	D	V	V	I	I	T	A	S	I	P	G	R	P	K	D	D	R	S	E	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	G	N	A	R	I	L	D	S	V	A	E	G	V	K	K	Y	C	P	N	A	F	V	I	C	I	T	N	P	L	D	V	M	V	S	H	F	Q
Template Known Secondary structure			S									S	S			S	S		G	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T	S							S	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		R	H	T	G	F	K	R	F	I	G	V	C	N	I	P	I	G	M	K	M	F	I	R	D	V	L	M	L	K	D	S	D	D	L	S	I	D	L	F	G	L	N	H	M	V	F	I	K	D	V	L	I	N	G	K	S	R	F	A	E	L	L	D	G	V	A	S	G	Q	L	K	A	S	S	V	K	N	I	F	D
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	S	G	L	P	H	.	.	.	.	.	.	.	.	.	.	.	.	N	K	V	C	G	M	A	G	V	L	D	S	S	R	F	R	T	F	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	F	G	V	N	A	S	D	V	S	A	N	V	I	G	G	H	G	D
Template Known Secondary structure								G	.	.	.	.	.	.	.	.	.	.	.	.	G	G																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T			G	G	G						B	B		S	S	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		151	.	.	.	.	.	.													.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.																						.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.		.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																	.																																																																.
Query SS confidence																	.																																																																.
Query Sequence		L	P	F	S	E	G	L	I	R	S	L	N	L	L	P	.	C	S	Y	L	L	Y	Y	F	K	Q	K	E	M	L	A	I	E	M	G	E	Y	Y	K	G	G	A	R	A	Q	V	V	Q	K	V	E	K	Q	L	F	E	L	Y	K	N	P	E	L	K	V	K	P	K	E	L	E	Q	R	G	G	A	Y	Y	S	.
Query Conservation																	.																																																																.
Alig confidence																	.																.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.											.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Sequence		G	M	V	P	A	T	S	S	V	S	V	G	G	V	P	L	S	S	F	I	K	Q	G	L	I	T	Q	E	Q	I	D	.	.	.	.	.	.	.	.	.	.	.	.	.	E	I	V	C	H	T	R	I	A	W	K	E	V	A	D	.	.	.	.	.	.	.	.	.	.	N	L	K	T	G	T	A	Y	F	A	P
Template Known Secondary structure		T		B			G	G	G				T	T									T	T	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.								T								.	.	.	.	.	.	.	.	.	.				S	S
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.														.	230	.	.	.	.	.	.	.	.	.	240	.	.	.											.	.	.	.	.	.	250	.	.	.	.
			319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure		.
Query SS confidence		.
Query Sequence		.	D	A	A	C	E	V	I	N	A	I	Y	N	D	K	Q	A	E	H	Y	V	N	I	P	H	H	G	Q	I	D	N	I	P	A	D	W	A	V	E	M	T	C	K	L	G	R	D	G	A	T	P	H	P	R	I	T	H	F	D	D	K	V	M	G	L	I	H	T	I	K	G	F	E	I	A	A	S	N	A	A
Query Conservation		.
Alig confidence		.																														.	.																									.
Template Conservation																																.	.																									.
Template Sequence		A	A	A	A	V	K	M	A	E	A	Y	L	K	D	K	K	A	V	V	P	C	S	A	F	C	S	N	H	Y	G	.	.	V	K	G	I	Y	M	G	V	P	T	I	I	G	K	N	G	V	E	D	I	L	E	L	D	.	L	T	P	L	E	Q	K	L	L	G	E	S	I	N	E	V	N	T	I	S	K	V	L
Template Known Secondary structure														T	T												S	S	B	T	T	.	.	B	S	S											T	T										.
Template Predicted Secondary structure																																.	.																									.
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280			.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.		.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		398	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	N	A
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		330	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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