Job Description P17411 Confidence 100.00% Date Thu Jan 5 11:36:08 GMT 2012 Rank 53 Aligned Residues 302 % Identity 15% Template c2dfdD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:malate dehydrogenase; PDBTitle: crystal structure of human malate dehydrogenase type 2 Resolution 1.90 Å

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		4	.	.	.	.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure											.
Query SS confidence											.
Query Sequence		K	L	K	V	V	T	I	G	G	.	G	S	S	Y	T	P	E	L	L	E	G	F	I	K	R	Y	H	E	L	P	V	S	E	L	W	L	V	D	V	E	G	G	K	P	K	L	D	I	I	F	D	L	C	Q	R	M	I	D	N	A	G	V	P	M	K	L	Y	K	T	L	D	R	R	E	A	L	K	D	A	D
Query Conservation											.
Alig confidence											.																			.	.	.	.									.	.												.	.	.
Template Conservation																														.	.	.	.									.	.												.	.	.
Template Sequence		N	A	K	V	A	V	L	G	A	S	G	G	I	G	Q	P	L	S	L	L	L	K	N	S	P	L	V	S	.	.	.	.	R	L	T	L	Y	D	I	A	.	.	H	T	P	G	V	A	A	D	L	S	H	.	.	.	I	E	T	K	A	A	V	K	G	Y	L	G	P	E	Q	L	P	D	C	L	K	G	C	D
Template Known Secondary structure									T	T	T	S	T	T												T	T			.	.	.	.							S	S	.	.	S									T	T	.	.	.	S	S	S	S								S	G	G	G						T	T		S
Template Predicted Secondary structure																														.	.	.	.									.	.												.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.			.	.	.	.	.	.	.	.	50	.	.				.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.
Query SS confidence																																																																										.	.	.
Query Sequence		F	V	T	T	Q	L	R	V	G	Q	L	P	A	R	E	L	D	E	R	I	P	L	S	H	G	Y	L	G	Q	E	T	N	G	A	G	G	L	F	K	G	L	R	T	I	P	V	I	F	D	I	V	K	D	V	E	E	L	C	P	N	A	W	V	I	N	F	T	N	P	A	G	M	.	.	.	V	T	E	A	V
Query Conservation																																																																										.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	V	I	P	A	G	V	P	R	K	P	G	M	T	R	D	D	L	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	T	N	A	T	I	V	A	T	L	T	A	A	C	A	Q	H	C	P	E	A	M	I	C	V	I	A	N	P	V	N	S	T	I	P	I	T	A	E	V
Template Known Secondary structure								S					T	T			G	G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T	S						S	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.																					.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	H	T	G	F	K	R	F	I	G	V	C	N	I	P	I	G	M	K	M	F	I	R	D	V	L	M	L	K	D	S	D	D	L	S	I	D	L	F	G	L	N	H	M	V	F	I	K	D	V	L	I	N	G	K	S	R	F	A	E	L	L	D	G	V	A	S	G	Q	L	K	A	S	S	V	K	N	I	F
Query Conservation
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	K	K	H	G	V	Y	N	.	.	.	.	.	.	.	.	.	.	.	.	P	N	K	I	F	G	V	T	T	L	D	I	V	R	A	N	T	F	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	L	K	G	L	D	P	A	R	V	N	V	P	V	I	G	G	H	A
Template Known Secondary structure					T	T				.	.	.	.	.	.	.	.	.	.	.	.	T	T	S																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T			G	G	G		B							S	S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		137	.	.	140	.	.	.	.													.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.																						.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	P	F	S	E	G	L	I	R	S	L	N	L	L	P	C	S	Y	L	L	Y	Y	F	K	Q	K	E	M	L	A	I	E	M	G	E	Y	Y	K	G	G	A	R	A	Q	V	V	Q	K	V	E	K	Q	L	F	E	L	Y	K	N	P	E	L	K	V	K	P	K	E	L	E	Q	R	G	G	A	Y	Y	S	D
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template Sequence		G	K	T	I	I	P	L	I	S	Q	C	T	P	K	V	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Q	D	Q	L	T	A	L	T	G	R	I	Q	E	A	G	T	E	V	V	K	A	K	A	G	A	G	S	A	T	L	S	M	.	.	.	.	.	.	.	A	Y
Template Known Secondary structure		G	G	G					G	G	G		B	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								T	T	S		S						.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200																						.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.								.	.
		320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		A	A	C	E	V	I	N	A	I	.	.	.	Y	N	D	K	Q	A	E	H	Y	V	N	I	P	H	H	G	Q	I	D	N	I	P	A	D	W	A	V	E	M	T	C	K	L	G	R	D	G	A	T	P	H	P	R	I	T	H	F	D	D	K	V	M	G	L	I	H	T	I	K	G	F	E	I	A	A	S	N	A
Query Conservation											.	.	.
Alig confidence											.	.	.																	.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		A	G	A	R	F	V	F	S	L	V	D	A	M	N	G	K	E	G	V	V	E	C	S	F	V	K	S	Q	.	.	.	.	E	T	E	C	T	Y	F	S	T	P	L	L	L	G	K	K	G	I	E	K	N	L	G	I	G	K	V	S	S	F	E	E	K	M	I	S	D	A	I	P	E	L	K	A	S	I	K	K
Template Known Secondary structure															T	T		S	S											.	.	.	.	S	S	S	S	S										T	T										S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		397	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	E	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		312	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions