Job Description P17411 Confidence 100.00% Date Thu Jan 5 11:36:08 GMT 2012 Rank 4 Aligned Residues 428 % Identity 19% Template c1vjtA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: crystal structure of alpha-glucosidase (tm0752) from thermotoga2 maritima at 2.50 a resolution Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.			.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		L	K	V	V	T	I	G	G	G	S	S	Y	T	P	E	L	L	E	G	F	I	K	R	Y	H	E	L	P	.	.	V	S	E	L	W	L	V	D	V	E	G	G	K	P	K	L	D	I	I	F	D	L	C	Q	R	M	I	D	N	A	G	V	P	M	K	L	Y	K	T	L	D	R	R	E	A	L	K	D	A	D
Query Conservation																														.	.
Alig confidence																														.	.											.	.
Template Conservation																																										.	.
Template Sequence		X	K	I	S	I	I	G	A	G	S	V	R	F	A	L	Q	L	V	G	D	I	A	Q	T	E	E	L	S	R	E	D	T	H	I	Y	X	X	D	V	H	.	.	E	R	R	L	N	A	S	Y	I	L	A	R	K	Y	V	E	E	L	N	S	P	V	K	I	V	K	T	S	S	L	D	E	A	I	D	G	A	D
Template Known Secondary structure								T	T	T	S														S	T	T	T		S	T	T								S		.	.																			T									S							T	T		S
Template Predicted Secondary structure																																										.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40			.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		83	.	.	.	.	.	.	90								.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.				.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.																			.	.	.	.																				.	.	.
Query SS confidence										.	.	.	.	.	.	.																			.	.	.	.																				.	.	.
Query Sequence		F	V	T	T	Q	L	R	V	.	.	.	.	.	.	.	G	Q	L	P	A	R	E	L	D	E	R	I	P	L	S	H	G	Y	.	.	.	.	L	G	Q	E	T	N	G	A	G	G	L	F	K	G	L	R	T	I	P	.	.	.	V	I	F	D	I	V	K	D	V	E	E	L	C	P	N	A	W	V	I	N	F
Query Conservation										.	.	.	.	.	.	.																			.	.	.	.																				.	.	.
Alig confidence										.	.	.	.	.	.	.																			.	.	.	.																				.	.	.
Template Conservation
Template Sequence		F	I	I	N	T	A	Y	P	Y	D	P	R	Y	H	D	S	G	S	Q	R	W	D	E	V	T	K	V	G	E	K	H	G	Y	Y	R	G	I	D	S	Q	E	L	N	X	V	S	T	Y	T	Y	V	L	S	S	Y	P	D	X	K	L	A	L	E	I	A	E	K	X	K	K	X	A	P	K	A	Y	L	X	Q	T
Template Known Secondary structure												T	T	T		S	S															T	T		T	T		T	T		B	T	T	B			T	T	S		S	T	T	T																				T	T
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	N	P	A	G	M	V	T	E	A	V	Y	R	H	T	G	F	K	R	F	I	G	V	C	N	I	P	I	G	M	K	M	F	I	R	D	V	L	M	L	K	D	S	D	D	L	S	I	D	L	F	G	L	N	H	M	V	F	I	K	D	V	L	I	N	G	K	S	R	F	A	E	L	L	D	G	V	A	S	G
Query Conservation
Alig confidence																			.															.								.
Template Conservation																			.															.								.
Template Sequence		A	N	P	V	F	E	I	T	Q	A	V	R	R	W	T	G	A	.	N	I	V	G	F	C	H	G	V	A	G	V	Y	E	.	V	F	E	K	L	D	L	.	D	P	E	E	V	D	W	Q	V	A	G	V	N	H	G	I	W	L	N	R	F	R	Y	R	G	E	D	A	Y	P	L	L	D	E	W	I	E	K	K
Template Known Secondary structure		S	S													S			.								G	G	G	G				.					T	T		.		G	G	G									T	T										T	T														T
Template Predicted Secondary structure																			.															.								.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.		.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		229	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.						260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.														.	.	.	.	.	.	.
Predicted Secondary structure															.	.																			.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.																			.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	L	K	A	S	S	V	K	N	I	F	D	L	.	.	P	F	S	E	G	L	I	R	S	L	N	L	L	P	C	S	Y	L	.	.	.	.	.	L	Y	Y	F	K	Q	K	E	M	L	A	I	E	M	G	E	Y	Y	K	G	G	A	.	.	.	.	.	.	.	.	.	.	.	.	.	R	A	Q	V	V	Q	K
Query Conservation															.	.																			.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.																			.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	E	W	E	P	K	N	P	W	D	T	Q	X	S	P	A	A	X	D	X	Y	K	F	Y	G	X	L	P	I	G	D	T	V	R	N	G	S	W	K	Y	H	Y	N	L	E	T	K	K	K	W	F	G	K	F	G	G	I	D	N	E	V	E	R	P	K	F	H	E	Q	L	R	R	A	R	E	R	L	I	K
Template Known Secondary structure		G	G	G				S	S	T	T			T	T	S											S	S				G	G	G	T	T	S			G	G	G	T	S	S										T	T			S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	K	Q	L	F	E	L	Y	K	N	P	E	L	K	V	K	P	K	E	L	E	Q	R	G	G	A	Y	Y	S	D	A	A	C	E	V	I	N	A	I	Y	N	D	K	Q	A	E	H	Y	V	N	I	P	H	H	G	Q	I	D	N	I	P	A	D	W	A	V	E	M	T	C	K	L	G	R	D	G	A	T	P
Query Conservation
Alig confidence																							.	.
Template Conservation																							.	.
Template Sequence		L	A	E	E	V	Q	Q	N	P	G	X	K	L	T	E	E	H	P	E	I	F	.	.	P	K	G	K	L	S	G	E	Q	H	I	P	F	I	N	A	I	A	N	N	K	R	V	R	L	F	L	N	V	E	N	Q	G	T	L	K	D	F	P	D	D	V	V	X	E	L	P	V	W	V	D	C	C	G	I	H	R
Template Known Secondary structure										T	T								T	T	T	S	.	.		S	S						S																							T	T	S	S	T	T	S		S	S	S										T	T
Template Predicted Secondary structure																							.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.			.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		369	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.			.	.	.	.	.	.	.	.	440
Predicted Secondary structure																.	.																																																		.	.
Query SS confidence																.	.																																																		.	.
Query Sequence		H	P	R	I	T	H	F	D	D	K	V	M	G	L	.	.	I	H	T	I	K	G	F	E	I	A	A	S	N	A	A	L	S	G	E	F	N	D	V	L	L	A	L	N	L	S	P	L	V	H	S	D	R	D	A	E	L	L	A	R	E	M	I	L	A	.	.	H	E	K	W	L	P	N	F	A
Query Conservation																.	.																																																		.	.
Alig confidence				.												.	.																																																		.	.
Template Conservation				.
Template Sequence		E	K	.	V	E	P	D	L	T	H	R	I	K	I	F	Y	L	W	P	R	I	L	R	X	E	W	N	L	E	A	Y	I	S	R	D	R	K	V	L	E	E	I	L	I	R	D	P	R	T	K	S	Y	E	Q	I	V	Q	V	L	D	E	I	F	N	L	P	F	N	E	E	L	R	R	Y	Y	K
Template Known Secondary structure				.			S										T																		T											T		T	T																T	S	G	G	G							T
Template Predicted Secondary structure				.
Template SS confidence
		394	.		.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.