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Job DescriptionP17411
Confidence100.00%DateThu Jan 5 11:36:08 GMT 2012
Rank52Aligned Residues304
% Identity14%Templatec1sevA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:malate dehydrogenase, glyoxysomal precursor; PDBTitle: mature and translocatable forms of glyoxysomal malate2 dehydrogenase have different activities and stabilities3 but similar crystal structures
Resolution2.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   4.....10. ........20.........30.........40.........50.........60.........70.........80..
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Query Sequence  KLKVVTIG. GGSSYTPELLEGFIKRYHELPVSELWLVDVEGGKPKLDIIFDLCQRMIDNAGVPMKLYKTLDRREALKDAD
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Template Sequence  GFKVAILGAAGGIGQPLAMLMKMNPLVS. . . . VLHLYDVV. . NAPGVTADISH. . . MDTGAVVRGFLGQQQLEAALTGMD
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TTTSTTT
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   44.....50.........60.........70. ........ 80.........90 .........100.........110....
 
   83......90.........100.........110.........120.........130.........140.........150... .....
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Query Sequence  FVTTQLRVGQLPARELDERIPLSHGYLGQETNGAGGLFKGLRTIPVIFDIVKDVEELCPNAWVINFTNPAG. . . . MVTEA
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Template Sequence  LIIVPAGVPRKPGMTRDDLF. . . . . . . . . . . . . . . . . . . . KINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEV
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   115....120.........130.... .....140.........150.........160.........170....
 
   159160.........170.........180.........190.........200.........210.........220.........230........
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Query Sequence  VYRHTGFKRFIGVCNIPIGMKMFIRDVLMLKDSDDLSIDLFGLNHMVFIKDVLINGKSRFAELLDGVASGQLKASSVKNI
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Template Sequence  FKKAGTYDP. . . . . . . . . . . . KRLLG. VTMLDVVRANTFVA. . . . . . . . . . . . . . . . . . . . . EVLGLDPRDVDVPVVGGH
Template Known Secondary structure  TTT


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   175....180... ..... .190.........200.. .......210.........220
 
   239240.........250.........260.........270.........280.........290.........300.........310........
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Query Sequence  FDLPFSEGLIRSLNLLPCSYLLYYFKQKEMLAIEMGEYYKGGARAQVVQKVEKQLFELYKNPELKVKPKELEQRGGAYYS
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Template Sequence  AGVTILPLLSQVKPPSSF. . . . . . . . . . . . . . . . . . . . . TQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM. . . . . . . A
Template Known Secondary structure  SGGG
GGG
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   221........230........ .240.........250.........260.........270. .
 
   319320.........330.........340.........350.........360.........370.........380.........390........
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Query Sequence  DAACEVINAIYNDKQAEHYVNIPHHGQIDNIPADWAVEMTCKLGRDGATPHPRITHFDDKVMGLIHTIKGFEIAASNAAL
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Template Sequence  YAAVKFADACLRGLRGDAGVIECAFVS. SQVTELPFFASKVRLGRNGIEEVYSLGPLNEYERIGLEKAKKELAGSIEKGV
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   273......280.........290......... 300.........310.........320.........330.........340.........350.
 
   399
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Query Sequence  S
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Template Sequence  S
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   352
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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