Job Description P17411 Confidence 100.00% Date Thu Jan 5 11:36:08 GMT 2012 Rank 25 Aligned Residues 304 % Identity 18% Template c1lldA_ PDB info PDB header:oxidoreductase(choh (d)-nad (a)) Chain: A: PDB Molecule:l-lactate dehydrogenase; PDBTitle: molecular basis of allosteric activation of bacterial l-lactate2 dehydrogenase Resolution 2.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	V	T	I	G	G	G	S	S	Y	T	P	E	L	L	E	G	F	I	K	R	Y	H	E	L	P	V	S	E	L	W	L	V	D	V	E	G	G	K	P	K	L	D	I	I	F	D	L	C	Q	R	M	I	D	N	A	G	V	P	M	K	L	Y	K	T	L	D	R	R	E	A	L	K	D	A	D	F	V	T
Query Conservation
Alig confidence																									.	.	.	.																																.	.	.	.
Template Conservation																									.	.	.	.																																.	.	.	.
Template Sequence		K	L	A	V	I	G	A	G	A	V	G	S	T	L	A	F	A	A	A	Q	R	G	I	.	.	.	.	A	R	E	I	V	L	E	D	I	A	K	E	R	V	E	A	E	V	L	D	M	Q	H	G	S	S	F	Y	P	T	V	.	.	.	.	S	I	D	G	S	D	D	P	E	I	C	R	D	A	D	M	V	V
Template Known Secondary structure									S													T	T		.	.	.	.		S							S	S														T	G	G	G	S	T	T		.	.	.	.						S		G	G	G	G	T	T		S
Template Predicted Secondary structure																									.	.	.	.																																.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.					.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.					.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Q	L	R	V	G	Q	L	P	A	R	E	L	D	E	R	I	P	L	S	H	G	Y	L	G	Q	E	T	N	G	A	G	G	L	F	K	G	L	R	T	I	P	V	I	F	D	I	V	K	D	V	E	E	L	C	P	N	A	W	V	I	N	F	T	N	P	A	G	M	V	T	E	A	V	Y	R	H	T	G	F
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	T	A	G	P	R	Q	K	P	G	Q	S	R	L	E	L	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	T	V	N	I	L	K	A	I	M	P	N	L	V	K	V	A	P	N	A	I	Y	M	L	I	T	N	P	V	D	I	A	T	H	V	A	Q	K	L	T	G	L
Template Known Secondary structure										T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			T	T	S							S	S													T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.																					.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	F	I	G	V	C	N	I	P	I	G	M	K	M	F	I	R	D	V	L	M	L	K	D	S	D	D	L	S	I	D	L	F	G	L	N	H	M	V	F	I	K	D	V	L	I	N	G	K	S	R	F	A	E	L	L	D	G	V	A	S	G	Q	L	K	A	S	S	V	K	N	I	F	D	L	P	F	S	E
Query Conservation
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	E	.	.	.	.	.	.	.	.	.	.	.	.	N	Q	I	F	G	S	G	T	N	L	D	S	A	R	L	R	F	L	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	Q	T	G	V	N	V	K	N	V	H	A	Y	I	A	G	E	H	G	D	S	E	V	P	L
Template Known Secondary structure			T	.	.	.	.	.	.	.	.	.	.	.	.	T	S					T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T			G	G	G							B	S	S	S	T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		141	.													.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.																						.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.			.	320	.	.	.
Predicted Secondary structure																																																																											.	.
Query SS confidence																																																																											.	.
Query Sequence		G	L	I	R	S	L	N	L	L	P	C	S	Y	L	L	Y	Y	F	K	Q	K	E	M	L	A	I	E	M	G	E	Y	Y	K	G	G	A	R	A	Q	V	V	Q	K	V	E	K	Q	L	F	E	L	Y	K	N	P	E	L	K	V	K	P	K	E	L	E	Q	R	G	G	A	Y	Y	S	.	.	D	A	A	C	E
Query Conservation																																																																											.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																							.	.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	E	S	A	T	I	G	G	V	P	M	S	D	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	P	L	P	G	H	D	P	L	D	A	D	K	R	E	E	I	H	Q	E	V	K	N	A	A	Y	K	I	I	N	G	K	G	A	T	N	Y	A	I	G	M	S	G	V	D
Template Known Secondary structure		T	T	S				T	T			G	G	G		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T																									T	S			S
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.																						.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		324	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	N	A	I	Y	N	D	K	Q	A	E	H	Y	V	N	I	P	H	H	G	Q	I	D	N	I	P	A	D	W	A	V	E	M	T	C	K	L	G	R	D	G	A	T	P	H	P	R	I	T	H	F	D	D	K	V	M	G	L	I	H	T	I	K	G	F	E	I	A	A
Query Conservation
Alig confidence																								.				.
Template Conservation																								.				.
Template Sequence		I	I	E	A	V	L	H	D	T	N	R	I	L	P	V	S	S	M	L	K	D	F	.	H	G	I	.	S	D	I	C	M	S	V	P	T	L	L	N	R	Q	G	V	N	N	T	I	N	T	P	V	S	D	K	E	L	A	A	L	K	R	S	A	E	T	L	K	E	T	A
Template Known Secondary structure								T	T												S	S	B	.	T	T	B	.		S	S										T	T						S
Template Predicted Secondary structure																								.				.
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.		.	270	.		.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions